RNA id: CI01000299_03268500_03312490.mRNA



Basic Information


Item Value
RNA id CI01000299_03268500_03312490.mRNA
length 5510
RNA type mRNA
GC content 0.51
exon number 29
gene id CI01000299_03268500_03312490
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3268193 ~ 3313328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAATTTCTGAAGTCAAATTTATATATTAATCATATTAGATGCCGCCTCCATTTCCAGAGAACTTAAGGAAGGGGAAAACTTCCGCCAACTAGGGCTTCTTGAGCCCAAACCCAATCCCAACCCCTTCACCCCCTTTTTGGCCATTTGGCTCCTATTTCTTACCTCCATCTCATCCCGACCTCCACCATTCGCCCCTCGCTGGCCACGGCAGTCCTCCCTCCCCGTTCCCGCCCCCACCCTCCCACTTCTCATCACCCAACCCCTTCCCCACACCACACTTCCCACCCCTCCACCCAAGTCACCATGGCAACCGGCACAACCACCACCGCCCGTGAACATCTCCTAGTGGTGCGGAGGCGCACCCCGCACATGCGCTACACGTTGAGCCCGGAAAACCTCCGCAGCCTTTCGTCACAGGGTGGTTCTGGGAATGTGGGGAGCTCTAGAGGAGGAGCTCCTGAACCGATGGGCCTGCAGCGGGCCAACAGTGACACCGACCTGGTGACGTCGGATAGCCGTTCCTCCTTAACAGCCTCTACATACCAGTTCACACTCGGGCGAGGGCAAAACCTGGTCATCTCTTGGGACATCAAGGAGGAGGTGGATGCCACTGACTGGATTGGGCTGTACCATATCGGTAAGATGTTTTGGGGTGTGGGGAAACTCTCTATTGAAAATGATGAAATATATTACTTTTTAGGAAGGGGTTTATTTTTATCTGGTAACTTAAAGAGACAGTTTGTCCTGAATCAGAGGGCGGAAAGGAGAAAAAGATTGTGTCACAGAGAGATAATCAGCGATGAGACGTGTCCCGCTAACGTTTGGGATTCGAAGAACCGCGGGGTGAACGGCACTCAGAGGGGGCAGATCGTCTGGAGGCTTGAGGCCGGACCGTACTTCATGGAGCCTGAGACCAAAATCTGTTTCAAATATTACCATGGAGTGAGTGGAGCGCTGAGGGCCACAACCCCCTGCATCACTGTCAGCAACCCTGGAGTCACAGTCGGGACAGAAGGACAGGTGGATGGACAGTCTGTCACTGAACACTGCAGGAAATTGGTCAGCTTTACTCTATCAGATATCAGGGCTCAGGGTCTGAAGAAGGGCATGTTTTTTAATCCAGACCCCTATCTGAAGATGAGTATCCAACCAGGCAAGAGGCACGGCTTCCCTACGTTCACCCACCACGGCCAGGAGAGACGAACCTCCATCATATCTAACACCACTAACCCTGTGTGGCACGGAGAGAAGTACACTTTTGTTGCACTGATGACAGACGTTTTGGAAATTGAGGTCAAGGACAAATTTGCAAAAAGTCGCCCGATCATCAAACGCTTTTTAGGTCAGCTGACAATGCCGGTGCAGAGACTGCTGGAGAGACATACAGCGGGTGATCAACATGTGAGCTTCACGCTTTGCCGTCGTCTACCGACAGAACATGTGAGCGGACAACTTTACTTCAGGGTGGAGATCACCTCCAACGGACATGAAGATGCAATGGGGTCTCTGCTGGGAGCCTCCTCTATGAACGGAGACCCTGGGAGCCCATCAGACGACGAGGATGTTTTACATCCTTCCTCCCGCATGGCTAGGGGCCCCTCACCCACTGGCTCCGAAGGGTCCCTGCACGGTGACGCTTTTAGGACTGAGGAGTGCATGATGGATCCTGATGAGGATCGACTCTTGAGAGACGGGCCACCAGATTTGGCCGAAGGAACCCCGGGCCATACTCATCGCCAGGCCTCACTTAACGACTACCTGGATGCCATTGAGGCCCCTAAGGGCCCCGGAGACAGACCGCTAGGGGCCGCCTCACCTAAACTACGCTCAAGTTTCCCCACTGACACACGGCTCAATGCTATGCTACATATAGACTCTGATGAAGACGAGGAAGGACACGTCTCCCGGGATTCGGCATTGACCAATGGCACTCCACGGCCTGATGGACACACCTCCTCTGAACAGGACAAACGGGAGGGTCCTGTGAAAGCGAGGGAAAGGCTTGAGTCGGAAGCTGCGAGCAGCACCACAGATACTGAAGTCACGCCATCAGGGTCAAGCAGTGGCTCCACAAAGAGCCAAAATGGAGGCGCTGAGGGCGGCCAAGAAGGAGCTGCTGCCTCTGGAGACTCAACACAAAACATCAGAAGCTCTCATAAGCCCGTTTTCAAAATACAGGATGAGGAAGGAGTTGCATCCAAGGCGGTCACTAGGGATGAAGGATCAACAGAGGCTGCTGCAGTCACAGAGCCCTCAGCATCTGGCAGTAATGCAGCTGGTGAAGGAGGCGGAGCCACAGCAGCTAAGCAGCCAGAGCAGGGGAACTCCAGTGAGGCAGCCAATGAGGAGGAAGAAGATGCTGAAATCTGGCAGAGGAGGCGGAGTCTGCAAGCATCAGGAAACGCATCACAGGCTGAAGCGATGGAATTAACCAATGAAGCGAGAGGGGCAGCTGACGCAGCACAGGCTGCCACGCTAACAGATGGAGAGACAGGAGCCTGTGCTCAAGTGAACGGCCATCAGCCAGTGCGTTCTCTTCCCTCAGTGCGTCATGACATCACCCGCTATCAGAGAGTGGACGAGCCTCTTCCGCCAAACTGGGAAGCTCGTATTGACAGCCACGGCAGGATTTTCTATGTGGATCATGTGAACAGAACCACCACCTGGCAGCGGCCTACTGCTCCGGCTGCACCTCAGATCCTACAGAGATCCAACTCCATTCAACAGATGGAGCAGCTTAACCGAAGGTATCAGAGTATTCGGAGGACAATAACCAATGAGAGGACAGACGAACAGGCTGCAGAGATGCCTACAGACGACACTGACCTGCTGCATCACTCCATACCTGAGTACCGTCGGGACGGTGTGGTTGGGCCCACTAGCTCTCGCTCCCGGTTGTCTCTGCTGCTTCAGTCCCCCAGCGCCAAGTTTCTCACCAGCCCAGATTTCTTCACCGTACTGCATTCCAACCCTAGTGCCTACCGCATGTTTACAAGTAACACATGTCTAAAACACATGATCAGTAAAGTGCGACGGGACGCGCACCACTTCGAGCGCTACCAGCACAATCGAGACCTGGTTGCCTTCCTCAACATGTTCGCCAACAAACAGCTGGATCTTCCGCGAGGCTGGGAAATGAAACACGACCACACGGGAAAGCCTTTCTTCGTGGACCATAACTGCAGGGCCACCACCTTCATAGACCCACGGCTGCCGCTTCAGAGCGCTCGACCCAGCAGCCTCCTCGCCCACCGCCAGCACCTCAGCCGTCAGCGCAGCCACAGCGCAGGGGAGGTGGGCGATGACCCTCGGCATGCCGGACCCGCTGTACTGCCACGCCCCTCGAACACCTTCACAGCCAATCGCAACCAGTGTCAGGATTTAGTTCCTGTTGCCTATAATGATAAAATAGTGGCATTTTTGCGGCAGCCGAACATATTTGAGATCCTTCAGGAGAGGCAGCCTGAGCTCATTAGGAATCACTCACTCAGGGAGAAGGTGCAGTTTATTCGTAATGAAGGAGCTTCGGGTTTAGCTCGCCTCTCCAGCGATGCAGACTTGGTGATTTTACTCAGGCTCACTTTTTTCACCAAACTCTCTCGTAACTCTGATCTCTTGCTCTCAGGTACACAACGAGCCAACGCTCGGGCCCCTGCGCCGTACAAGCGGGACTTTGAAGCCAAACTTCGGAATTTCTATCGCAAACTGGAGACGAAAGGCTACGGACAGGGTCCAGGCAAAGTCAAGTTGATAATCCGCAGAGATCATCTGCTGGAGGACGCCTTCAATCAGATCATGTGCTATTCTCGCAAAGATCTACAGAGAAGTAAACTCTACGTCAGCTTTGTTGGAGAAGAGGGACTGGACTACAGTGGCCCATCAAGAGAGTTTTTCTTTCTGGTGTCACGGGAGCTTTTTAACCCTTACTATGGCCTGTTTGAGTATTCGGCCAATGACACCTACACCGTCCAGATCAGCCCCATGTCTGCCTTCGTCGACAACCATCATGAGTGGTTTCGGTTTAGTGGCCGTATTCTAGGTCTCGCTCTTATCCATCAGTACCTGCTGGATGCCTTCTTCACACGACCCTTCTACAAAGGCCTACTGCGAATTCCATGTGATCTGAGTGATCTGGAGTATCTTGATGAGGAGTTTCATCAGAGTCTCCAGTGGATGAAGGACAATGACATAGAAGACATGCTGGACCTGACCTTCACCGTCAACGAGGAGGTGTTTGGACAGGTTGTAGATGCGCGGCTGGTGTCGGTGTTTGACGCGCGAGAGCTGGAGCTGGTGATCGCCGGAACGGCAGAGATTGATCTGGGAGATTGGAGGAACAACACCGAGTACAGAGGAGGTTACCATGACAACCACATCGTGATTCGCTGGTTCTGGGCGGCAGTGGAGCGATTCAACAATGAGCAGAGACTCAGATTGCTCCAGTTTGTGACCGGGACGTCCAGTATCCCGTACGAAGGCTTCGCCGCCCTCAGGGGCAGCAACGGACCGCGACGCTTCTGTGTAGAGAAATGGGGGAAAATCTCGTCTCTGCCCAGGGCTCACACATGTTTCAACCGTCTGGACCTCCCCCCGTATCCCTCCTTCTCCATGCTGTACGAGAAGATGCTGACGGCAGTGGAGGAGACCAGCACTTTCGGTTTGGAGTGAATGTTGACCTTTGCACTTTGAGCTGAACAAATACATTTCCTCAACACGTCTAGAAGAGCAAAGGAAGTAACAGACACCAGAAGCACTATATTTTGTACACCGTATCACTTAAAAATACTTCCTCAGAAACGCGCAGAACAGAAAACAATCAACCACACAACTGATAGAAGTGTGGATGTTCTCTAAATGTTTCCCAGATGCAAACGTGATTTTCTTTGTTCCGTCTGTATGGCGTCACAGCAAAAAGTAATCGGCTCTGGATGCATCGAGGAGGATGTGACCAGCCAAATGCAAAGCTGAGTTACTTAAATGAGGAGCAAAACAAACCCAAAGGACTTTGATATTCTCACTCTTTTTATCTGTAAAAAAAAAAAAAAAAAAAAAAAAGACTTTTTTACGGAGCATCAAAATACAGCGTGAATGAACAAATATAGTGTTGTGAGCTTTTTCAGACGTCTCAGATCGCCTCAAGCAAGACACATGACAGCGCTGCCCTGTATATTGAATTGAAATGTGTGTTCTCTCTTCTTTTTATCATATTTATACACGAGTCCATGTCACATGTTTGTTTTGAAAGCGTATTCTGTCCAGCTGTCGTGTCAGATTTGTGACACTTTTGAATGATTTTGGTTGTGCATGTGCTCTCACACGTGACGTTTTCAAAGGGCATGTTACACTGACGCACTACAACATCATGAATGTGACCACTAAATGATAGAAAAATGATGATTTTATGACCTTCTGACCTTTCCGTTGTCCTCAGATGACAGTTTTATTTCTGATGACATTTTGAAAGAGAGAATGGTCACATATACCCACTCAACAAGTCAACATGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466103 lncRNA upstream 58782 3208926 ~ 3209411 (+) True G405611
TU465895 lncRNA upstream 457521 2810452 ~ 2810672 (+) True G405407
TU465878 lncRNA upstream 537684 2730273 ~ 2730509 (+) True G405390
TU465873 lncRNA upstream 546869 2720862 ~ 2721324 (+) True G405385
TU465801 lncRNA upstream 553052 2659354 ~ 2715141 (+) True G405329
TU466111 lncRNA downstream 7196 3320524 ~ 3321012 (+) True G405618
TU466112 lncRNA downstream 7867 3321195 ~ 3321433 (+) True G405619
TU466114 lncRNA downstream 20899 3334227 ~ 3335205 (+) True G405621
TU466154 lncRNA downstream 93257 3406585 ~ 3406810 (+) True G405660
TU466157 lncRNA downstream 97206 3410534 ~ 3410764 (+) True G405663
CI01000299_03267154_03267336.mRNA mRNA upstream 802 3267154 ~ 3267391 (+) True CI01000299_03267154_03267336
CI01000299_03237334_03244737.mRNA mRNA upstream 23378 3237334 ~ 3244815 (+) True CI01000299_03237334_03244737
CI01000299_03215678_03230586.mRNA mRNA upstream 37607 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
CI01000299_03189537_03200831.mRNA mRNA upstream 66787 3189319 ~ 3201406 (+) True CI01000299_03189537_03200831
CI01000299_03176677_03185710.mRNA mRNA upstream 82126 3176677 ~ 3186067 (+) True CI01000299_03176677_03185710
CI01000299_03366963_03373293.mRNA mRNA downstream 53490 3366818 ~ 3373682 (+) True CI01000299_03366963_03373293
CI01000299_03382616_03423028.mRNA mRNA downstream 69163 3382491 ~ 3423697 (+) True CI01000299_03382616_03423028
CI01000299_03453437_03453736.mRNA mRNA downstream 138972 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03478949_03486009.mRNA mRNA downstream 162760 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03495286_03498691.mRNA mRNA downstream 181211 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
TU466101 other upstream 113019 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 2661843 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2857405 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3195922 35462 ~ 72271 (+) True G403578
TU466041 other downstream 817930 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 982205 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1176490 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1389054 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1611134 4924462 ~ 4927844 (+) True G406096

Expression Profile