RNA id: CI01000299_03341031_03366645.mRNA


Basic Information

Item Value
RNA id CI01000299_03341031_03366645.mRNA
length 2361
RNA type mRNA
GC content 0.52
exon number 11
gene id CI01000299_03341031_03366645
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3340766 ~ 3366728 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTGATTCCTCAGAGCCGCACTGGGAATCTCCCCACACCAGGCCTGTTGCACTGTGTCGAATGTGCGCTGCATAACAACACAATGGCTCGCTGTAGAGGGATGTTCACTGCCAGCTTACCCAACCTGAACCCTTTGATCCTGCCCTTTGTAATGCAAATCAAAAGAAGGGGAGAGCAGGACACCAGGGAGAATCTTCATGATGGTACCATGTTTCATGCTGATGTGTGCAGTTGTCAATTTCTCACTCAAAATTTGGACTACACAGTTAATCTTGATGGGTTCGAGAAGCATACTGAATTGCGCAGGGCTCTTCAGGATCCATTTCACGAGTGCCAGCTTTGCCTTTATGGTTACTTAAAGGTGTCAGGAGGCATTAGCCTACATTCAGCTAACGGCTGCACTCAGATAATCTTCCTGCAGATGAGATGTAGGTTATTTTTAGGCGCCGCCTGGCGAGGCTGTAAATGGGAGGCAGGGCGAGTTTTGAGGGCCACTGTTGATGAGATCACACATGGCCCCATCATTCCCCCCGTCCTATCGATCGACCGCGGCCTGAAGGGGGATTGTGTCTCAGGGTGCCGCCAGCTGGCCAGTCCCTTCCTGAATCAAAGCACTGGCAGATCAATGACTGATCAGAGAACAGGCTGGATGAGTTTCACTTCTAAGCCCATCCGTCAGGAGGGTGTCATTGGAGTGCACAGATGCAGAAAAGATAATTGCACGGCGGGTTCGACTATGAGAGACAGACGTGTCTACATCGCCCTATCGCGAGCCAGGTTCGTCACTTTACAGATGATAGATCGCCACCAAACCCGCGGCGAGGAACAGCTGCGCTCGCTGCGGGGCACGTCACAGATGACTCACTTTATCAGTTCCAAGCTCTCGATGTTTGACAGTCGCTCCTTCCACGACGTGACATGCTTGGAGTTGGAACGCTATCTGCAGACAGAACCCAAACGGCTGTCTGACCTTTTCGACGAGGAACTGGACGGCCTCCTTACCCCCTCCTTCATGAAGGAAGACGGCGATGAAGACCTGTTAGACCCCCTCCTTCCCAGCCTCAACAACCCGCCTAGTCCTCCTCCTCCTCACCTCACCCCACGCAAAGAAACCGTCTCCTCCACTTCCTCTACTGTGACCTCTCCAGACATCACCTTAGGGGTCAACGCAGCCCAGCTGAACGCCGTCACCTCCCTAACGCCTCCCTCATCCCCAGAACTGGGCCGTCACTTAGTCAAACCCACCCACACACTTAGTGCCTCGCCCGACGGGACTCTCACGCTCAAGCTAGTGGCCCGAAAGGTGGGCTTGAGTTCTGCCAAGCTCGTGGCTGCTCACCCGGTGCCGCTCTCTCCCCAGCATGGCAGCAGCGGCGCACAGAGCGACGGGGAACAGGGTGGCACCTTCACCATGGGGGCTGGCGAGATGGCAGAGAACAAGAAGAGGGTCCATCGCTGCCAGTTCAATGGCTGTCGGAAAGTCTACACCAAGAGTTCACATCTGAAGGCACATCAGAGGACACATACAGCTCAGAATGAAAGTGTGGCCGTCATGGAAGATTCTTCACGCTATAAAAACAAAGATCCAAATAAACTCTGCCTGCCCCCCATTTCATACGTTACGTTCAGCAGCGCTAATGAACAAGCTACGACAGCCCATACGAACCACAGGCGGCTGCCATCCACAACGAAAAACATACAACATCAAAAATGGGAACGCAGTCTCTCACATCTGTTAAACGCAGCAAAGATCCCATTGGAAACTCAGAGGGAGAAGCCTTACAAGTGCTCATGGGAAGGCTGTGAATGGCGGTTCGCGAGAAGCGACGAGTTGACGAGGCACTACCGCAAACACACCGGCGCCAAGCCTTTCAAGTGCAATCACTGCGACAGGCCCCTTCTTAATCCGTCCCGACCGCGTCCGGACCCCCTGTCAGGACAGTGGGGTGGGGGTGTGGAAGAGGGTGGAGGTACACCAGCTGGTTTGGTGCCTCCTGGCAGTGGCTTGATCTGCCATCTGTCCGACCCTGCCAAAAACATACCCATTGATTTTCCCAATTCGTGCTCCTCCCCTTGCTCGTTCCAGGACAGGTGAGACTTAGCATGAAAGCATATGTCCAAGATGCTCCAACAATCAACTAGTCAAGTTTATCTAGATTTATCTTTGCACTTAGCAATTGCCTAACAACACTAAATTCACTCTGACAATGTTCTGACAACCCAGAACACCCTAACAACTGCCTAGTGAGTTTTGCCACTATGGAATTAATTAGTTTGTTTGTTTTTTAATTGATTGACAGCACTATTTATACATTAAATTTGACATTAGGCATAGTTATTCATACAGTGTTATAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467571 lncRNA downstream 5559 3334043 ~ 3335207 (-) True G406927
TU467587 lncRNA downstream 24320 3312383 ~ 3316446 (-) True G406941
TU467588 lncRNA downstream 35576 3303752 ~ 3305190 (-) True G406942
TU467578 lncRNA downstream 45629 3289462 ~ 3295137 (-) True G406932
TU467554 lncRNA downstream 100918 3239309 ~ 3239848 (-) True G406912
TU467573 lncRNA upstream 7192 3373920 ~ 3401249 (-) True G406928
TU467617 lncRNA upstream 48275 3415003 ~ 3415287 (-) True G406971
TU467618 lncRNA upstream 51356 3418084 ~ 3418322 (-) True G406972
TU467624 lncRNA upstream 70059 3436787 ~ 3437005 (-) True G406978
TU467628 lncRNA upstream 75360 3442088 ~ 3442324 (-) True G406982
CI01000299_03206204_03214303.mRNA mRNA downstream 126463 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 234381 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 283478 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 435620 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 463903 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_03492360_03492614.mRNA mRNA upstream 125486 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 768092 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 791273 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 804421 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 818239 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1322716 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1459778 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1680766 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2264875 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2667910 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 774390 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1109266 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1559240 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2074609 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2451841 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001541 True 2960 mRNA 0.45 4 NC_007112.7 6403551 ~ 6494384 (-)