RNA id: CI01000299_03492360_03492614.mRNA


Basic Information

Item Value
RNA id CI01000299_03492360_03492614.mRNA
length 931
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000299_03492360_03492614
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3492214 ~ 3493144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTCTCACTTTCACACAAACACAGTACTAGCATACAGGTATTCTCGTGTACATGCACACATCGGTAAAGCTGAACGTGTATACACTGACAAAAATGCATACGAGAGCAAGGCTGAATCTCACCAACACATCCAGAACACATCCGGGTCATATTTCACCACAAAATCAAAAGCAATAAGAAGTAATATTTTGCATTTTTATATTATTTGATGACAATTATGCATGATTTTCGCCATTAAATTGCCCCAATGGAAAAAAAATGAAGGAAAACATACATAATTCTTCGTAAAAAATGTCACAAAAAAAAAAAAAAAAAAAAAAACTTAATTTTATGCAAAATAGAATTTCTTGTTTTTCCCCTTTGATTTTAAGTGTAAAATGTGAGCTGGACATTCGTGAGATTCACCCACAAACATCTCACAGATTTGAACTGAGGCACCCGCAGATATTCTGATATTTTTACACATGATACGGAGTGGTCTGATAACTGCCGTGATTTTACACGAGGGGAGGTGCCGAGTTACAAGAAATGGCTTTACAGAATCCGCTCGGAAATCCACCGGCGTATTCTCCGGGACATCAGTGCTATATGTTTTTGCGCATTTCCTCATTGGTGGACTCCTCCCCCAGAGAGAATGAACCAATGGAACTTTGGGAGTTCTATGACATCACTTATGAACAAATTAATCTCAGTGTTTGTAGGTTGTCAAGTTTTGAGAAGCAGGCTGCAGAAGTTTGGCTTACGTATGTCCAGTTATATGTGGCAAAAACACAGAGGCACTAGCATAGGAGGTGACATCAGAGAGGTTACACGTCCTCGTTTTCATGATCACCATCTTTGTACTTCTTTTTTCTTTTCTTTTTTTTTGGGGGGGGGGGGGGGGAAACTTGATTGAGAAGAACCAGCGAGAGTGTCCACTTCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467640 lncRNA downstream 10672 3481099 ~ 3481542 (-) True G406993
TU467671 lncRNA downstream 14230 3477600 ~ 3477984 (-) True G407023
TU467668 lncRNA downstream 16418 3475530 ~ 3475796 (-) True G407020
TU467663 lncRNA downstream 19591 3472121 ~ 3472623 (-) True G407015
TU467660 lncRNA downstream 22836 3469091 ~ 3469378 (-) True G407012
TU467679 lncRNA upstream 11762 3504906 ~ 3560018 (-) True G407030
TU467763 lncRNA upstream 139277 3632421 ~ 3634581 (-) True G407112
TU467769 lncRNA upstream 144646 3637790 ~ 3643952 (-) True G407117
TU467773 lncRNA upstream 151450 3644594 ~ 3655355 (-) True G407119
TU467888 lncRNA upstream 420877 3914021 ~ 3920821 (-) True G407232
CI01000299_03341031_03366645.mRNA mRNA downstream 125486 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 277911 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 385829 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 434926 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 587068 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_04136702_04142005.mRNA mRNA upstream 641676 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 664857 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 678005 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 691823 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 734376 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
TU465509 other downstream 1474164 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1611226 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1832214 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2416323 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2819358 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 647974 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 982850 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1432824 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1948193 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2325425 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000146 False 2322 mRNA 0.40 11 NC_007112.7 6646572 ~ 6664123 (+)