RNA id: TU467961


Basic Information

Item Value
RNA id TU467961
length 438
RNA type TUCP
GC content 0.48
exon number 2
gene id CI01000299_04158468_04164223
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4158001 ~ 4164715 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCGACAGCAGCATCACTGAGACTGAGTGCACGTTAGACAGCCTGACGGATCGACGTGAAGTATTTATTTTTGCTTTTTGACATTTTGACGTTGTTTAAGGATGGAGAAAATGAGTTACACGTTCAGTCAGCACTATGAGGAAAAAATCCGCCCTTGCATCGACACTATCGACAATTTACGGTCTTTGGGAGTCGAAAAGGACCTGGCGTTGCCTGCCATCGCCGTCATTGGAGACCAAAGCTCAGGAAAGAGCTCTGTTCTGGAGGCGCTGTCAGGAGTAGCGTTACCCAGGGGTAGTGGAATTGTTACACGATGCCCTCTTGAGCTCAAGATGATAAGAACTAAAGGCGAAGGGAAATGGCATGCGAAAATCAGTTACCAGGACTATGAGGAAGACATTGATGACCCAGCAGAAGTGGAGAAAAAGATTCGTGAAGCCCAGGATGAGATGGCTGGAGCAGGTGTTGGTATTAGTGATGAACTCATCAGTCTGCAGATCACCTCTGCCAATGTTCCTGACCTCACTCTCATCGACCTTCCCGGGATCGCTCGAGTGGCAGTCAAGGGTCAACCTGAGAATATTGGAGATCAGGTAAATTTAACT

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467991 lncRNA downstream 11898 4129003 ~ 4129220 (-) True G407318
TU467958 lncRNA downstream 13478 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA downstream 13478 4123317 ~ 4127640 (-) False G407288
TU467957 lncRNA downstream 14395 4121679 ~ 4126723 (-) False G407288
TU467956 lncRNA downstream 14395 4123490 ~ 4126723 (-) True G407288
TU468003 lncRNA upstream 43473 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 95158 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 102030 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 102895 4267219 ~ 4267442 (-) True G407344
TU468021 lncRNA upstream 107588 4271912 ~ 4272172 (-) True G407348
CI01000299_03492360_03492614.mRNA mRNA downstream 647974 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 774390 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 926815 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 1034733 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 1083830 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_04171373_04175441.mRNA mRNA upstream 6825 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 20643 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 63196 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04242809_04251680.mRNA mRNA upstream 77873 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04370401_04385955.mRNA mRNA upstream 206077 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
TU465509 other downstream 2123068 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2260130 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2481118 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3065227 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 3468262 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU468104 other upstream 311670 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 761644 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1277013 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1654245 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1663512 5835889 ~ 5835989 (-) True G407805

Expression Profile