RNA id: CI01000299_04171373_04175441.mRNA


Basic Information

Item Value
RNA id CI01000299_04171373_04175441.mRNA
length 1733
RNA type mRNA
GC content 0.43
exon number 10
gene id CI01000299_04171373_04175441
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4171149 ~ 4175441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATAAGAACTAAAGGCGAAGGGAAATGGCATGCGAAAATCAGTTACCAGGACTATGAGGAAGACATTGATGACCCAGCAGAAGTGGAGAAGAAGATTCGTGAAGCCCAGGATGAGATGGCTGGAGCAGGTGTTGGTATTAGTGATGAACTCATCAGTCTGCAGATCACCTCTGCCAATGTTCCTGACCTCACTCTCATCGACCTTCCCGGGATCGCTCGAGTGGCAGTCAAGGGTCAACCTGAGAATATTGGAGATCAGACTGATCAGGAAGTTTGTTACAAAGCAAGAAACCTGGTAGACATTGTGCATAATGAGGTCATTCACCTTACTAAAGGATACATGATTGTAAGGTGCAGGGGACAAAAAGAGATTATAGATCATGTCACTCTCAATGAGGCCACAGCAACAGAGAACGCCTTCTTCCAAGACCATCCTCAATTCAGCAAACTCTATGAAGAAGGTTTTGCTACTATTCCTAAGTTGGCTGAGAAACTAACAATTGAGTTGGTTCATCACATTCAGAAATCTTTGCCTCGGTTAGAAGAGCAAATCGAGGCGAAGCTCGCAGAAACACAGAAGGAACTGGAGGCGTATGGCAACGGACCCCCATCAGACCCTGCAGAAAGACTGAGCTTTTTCATTGATAAAGTTACATCTTTCATACAAGATACCCTCAATCTGACCACTGGGGAAGAGATTAAATGTGGATCAGATCTACTGATTTTTCCAGAACTTCGTAAGGAATTTGCAAAATGGAATGGCTTCTTGGATCATTCAGGATATTTATTCAACAGGAAGATTGAGAAAGAAGTTGATAACTATGAAGCCAAGTATCGGGGAAGGGAGCTTCCAGGATTCATCAATTACAAGACCTTTGAAGGGCTTGTTAGGGATCAGATCAAGATGTTGGAAGAACCTGCCTTAAAGACGCTGAAGACCATCGCCGATGTGGTTAGAAGGAAGTTCATCCAACTGGCCCAGTACAGCTTCGCTGGATTCCCTAATCTTCTGAAAATAGCAAAGACTAAGATTGAAGCCATCAAGCTGGATAAAGAATCCTTGGCAGAATCCATGCTGAGGACCCAATTCAAGATGGAGCTCATTGTTTACAGTCAAGACGGCACATACAGCCAGAGCCTGCAACATGCAAAGAATAAGCTGGAAGAGGATGAAAACGATGAAGACACTAAAAAAAGTGTTAATTGCATGAGCGTAGGCATTAGCACAGACAGTAATGCCACCTTGCGTGAGATGAGGTTGCACCTTGAGTCCTACTACTCCATTGCAAGCAAGCGTCTATCTGACCAGATCCCAATGGTGATCCGCTATCTGCTGCTCCAGGAAGCAGCTTTGGAGCTGCAAAGGAACATGTTGCAGTTGCTGCATGATAAAGATGGTGTTGACTACCTGCTTAAAGAAGACTTTGACATTGGCCAAAAGCGGGAGAGCTTACTGAGTCGCCAGAAACGTCTGATGAAAGCACGCAGCCTCTTGGTTACCTATTAGAATTCACTTCATATAGTCGATTGCGACAGTTTTAATGCAACAAAATCATATGCTCAAGAGGTTATAGCTTGACATATTACATTTACATTACATTTTATCATTGAATCATGCACTCTCGCCTCATATAATATGCAGTGTGCCAGGAATTTTGGGCATCCTATTTGACTGTATCTTAAGGTCTGACAAACAGGTAATGTTTTTATCAACTTTGCCTTCTTAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467991 lncRNA downstream 41929 4129003 ~ 4129220 (-) True G407318
TU467958 lncRNA downstream 43509 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA downstream 43509 4123317 ~ 4127640 (-) False G407288
TU467957 lncRNA downstream 44426 4121679 ~ 4126723 (-) False G407288
TU468003 lncRNA upstream 32356 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 84041 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 90913 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 91778 4267219 ~ 4267442 (-) True G407344
TU468021 lncRNA upstream 96471 4271912 ~ 4272172 (-) True G407348
CI01000299_04158468_04164223.mRNA mRNA downstream 6434 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04136702_04142005.mRNA mRNA downstream 29024 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_03492360_03492614.mRNA mRNA downstream 678005 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 804421 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 956846 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_04186183_04196219.mRNA mRNA upstream 9526 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 52079 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04242809_04251680.mRNA mRNA upstream 66756 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04370401_04385955.mRNA mRNA upstream 194960 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 221033 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
TU467961 other downstream 6825 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2153099 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2290161 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2511149 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3095258 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 300553 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 750527 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1265896 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1643128 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1652395 5835889 ~ 5835989 (-) True G407805

Expression Profile