RNA id: CI01000299_04370401_04385955.mRNA


Basic Information

Item Value
RNA id CI01000299_04370401_04385955.mRNA
length 4735
RNA type mRNA
GC content 0.47
exon number 11
gene id CI01000299_04370401_04385955
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4370401 ~ 4388020 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCGACTACCCAGGAGCAGCGCCGACAAATAAAACCAGCAGGTAAGGCATTCCGAGCATACCAACCATACATTTCTCTATATTGATGTATGTTTGACACCTCACTGTTACTGTACAGGTAGACGTTGTCGCATTCCATGACAGTGACTGGGCGGACCAAAACTGTATCCCACCGGCCCGCAGAGCTAATTTAACATATGAACAAGAGGAAATACTGGCAAATGTCAATAACAGGAGTCAAGCGAGCGGCTTGTGAGGGATCAGAGCTCTGAGACTGGCTGGCGGAGCCCCGTTAAGACGCACAAGCGGATTAGGACTCGCGAGCAGGTGCCTTTGTTGGCTCGCGCCGTTGCTAGTGGAGACCCGCAGTAGCCCGACGCGCTTCTTTAAAATTAATGCCTCCAAATGAGAGTCTCTTCGGCACACGGGGAATAGCGCGCGCTTGACAGGTAAGAACTATTCTGCAACCTTGTGTTTGATGCTTTTCGTAAGTCTTTTCAAGAAACTTTAGTTATTGTGCGTCAGTTATAAAGTGCTGATCTTAAGCACGCGCAGTTACAATACAGTATATAGTGTAACATGTTTATGAAGGTTAAATTATTCATTCTCATTTAATGTCCTGTGCCTTTAAGAATCATATATAACGTTTTGTTTAAATAATTGTGCGCAGGACAGGACGCAAGAAGGGAACACGTGAAGACTTTAGATGTACGCAGTATACCTGTAGACTGATAGATTATTTAAATGAGGCTCAGCATGTCAACTGCATCAGTTTGTGAATAGGCTTCACGAGCGGACGGTGAAGTATTTTCACGCACGAGCAGATGGTCTCCGTTTAGACTGCCGAGTAGTGAGGATTTTAGCTGATGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCACACACACACACACACACACACACACACACACACTGTTAGAAGGTGTTTCTCATGTCTGCAGCATTGGAGAGACATCTCTGCAGTCTATCTATCTATCTATCTATCTATCTTTCTATCTATCTATATTTGTCGTTCTATCTATCTATCTGTCTGTCTATCTATCTATATTTGTCGTTCTATCTATCTATCTATCTATCTATCTGTCTATCTATATTTGTTGTTCTATCTATCTATCTATATTTGTCGTTCTATCTATCTATCTGTCTATCTGTCTGTCTATCTATCTATATTTGTCGTTCTTTCTATCTATCTATCTACATTTGTTCTATCTATCTATATATCTAGATTTATCTATCTATCTATCTATATTTGTCGTTCTTTCTATCTATCTATCTATCTATCTATCCTTCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATGTCATTCTATCCATCCATCATCTATCTATCTATCTATCTATCTATCTATATTTGTCGTTCTATCCATCTATCTATCTATCTATCTATCCGTCCGTCCGTCCGTCTGTCTGTCTATCTATCTATCTATCTATCTTTGTCGTTCTATCTATCTATCTATCTATCTATCTATCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTTTGTCGTTCTATCCCATCCATCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTCTAATCACTGTGTGATGATGAGCTATTTTAGTTTTTCCAATGTAAAGTAAATGCTATTGTTCTTTACTGGGTTATTGAATATTGTAAATTACTGTAACATACTGTCCAGAACTATTCTCATAGTTTCCATCAAGCTGTTTTTCCATGACATACTTGGCAACATCCCTGTTTGCCTCACAAAAATTCAGCCTTGCCCATCCTGTCTGTTTCTGTCTGTCTCTCATCTGTATCTCTGCTTGTACAGTACTGCCATGTGCCCCTGAATGCAATATTATATTAGTTGAAATGACAAGCTCACTATATCCTATAGCTTAACTCTGTTGCCAGTTGTTACAATTTGTTGTTTTCTCAGTTCTAGGGGTTTTTAATCAATGCACTTTCCGGCACCATGTTCTACGGTTCCTCATCTGCCAGCATGTCTCTGCCATCCAAGAACCGCCTGAAGCGTCAGAGTCGCACTTTTACGCAGGTTCTGTACCGGACACTGAGTTATCGGGATCGTCGCTCTGTGACCGACCTACCTGAGCAGGTACGGGACGATCCAGCTGAGCTTTCCACCCAGTCATCTGCACCAGGTGTGCTGAAGATATTTGGTGATGAAATCAGCGCTGGCGCTAACTACAAAAGCGTCCTTGCCACACCTCGTTCCAGCGCCCAAGAGTTGATCAAAGAGGCGCTTGAGCGCTACTCTCTAAACAAGGCCTCGGCCTGTAGCTATGTGTTATGTGACGTGATTGGACGGTTCGAGGGCCCAGAGCGACGGTGGCGGACTGAATGTCTTCGGGCGCTCGGGAACAACGAAAAGCCCCTCCTCTTGCAGGACCTCTGGAAGCCAAAGGAGGGTTACTCTCGTCGCTTTGAGCTCAGACGAAGAGCTGAGGTCGAGGAACTGGCAGCAAAAGAGAAGGACACAGTCACTGCAGGGACCCACACAAACTCCCCTGTGCTATCTTCAACCTTGAGTAGAAGCGGGCATGGTAGATGCCATCGGAGCTCCCCCCGGGGCTGGCGTTTGATACAGCCCTGTACAACTATTGTAAAAGATATCAATGCTCAAGCGAGGAAGCTACAAAGAAACCGTGCTAAAGGAACAATGACACTCCAGCACGGCTCCTCATTTTGCCGCAGCCTCAGTGAAACCAGCCTTAACTTGGTGGGACTGCCTGGTGAGGAACCTAAGAGGTACTACTCCACCCTCCCAGGGCCAATCAGAACACGCTCCACACGGGACGCTGAGATCCGTAAAGATGGTGGAGGAGTTAAACACTCTCTCTACCAATCTCCACACTTGCTGCTCCTTCAAGGGTACAACCAACAGGATTGCCTGGTTTACCTGTTGAATCGAGAGCAACACACAGTTGGTCAGGAAACAGCATCAGCACGGCCAAATATCTGCCTGTCATCTCCGGATGTGCTTCCACTTCACTGCCGAATACGTCGTGCTGTGCAACGACGTTCTTCCTCGGACCAGCGGTTACTCCTGGAACCTGTCGCCCATGGCAATGTTCTGGTTAACTTCATGCGTATTGAGCGGCCCACTCCACTACGTCATGGGGATTTGCTGTCCTTTGGTGCTCATTACATCTTCCTGTACAAAGACCCGCTGAGTGCGAAACCTCTTCCTGCCCAGACTCTCACTCGACTCCGGGCGCTGGCCCGACTCTGCGACAGCGAGTCGGGGGGTGTGCCTGAGAAAGGAGAGGCATGTCGTATGTGTGGGGCTGTATTACATGAACCAGTGGCGTCTCGGCGCAGCTCTAAGGCTCCGGCGCGAGGTGCACAGAAACGAAAGCTTGCATTGGAATTTGAGCGGGCTCACGAGGACGCGCTGGTGAACCGGGTGCTGACACTTATTGAGCCGAGCGGGGATGACCACAAGCTGACACCAGCATATTTGCTTTGTCTATGCATCAAGCACTCAGCTAATACATTTCCACCTGGCAGCTTCGGTAAACTACTGCTGAAAATTGCCAAGAGGATTCAGACCATAGCATGGGAGAAGACAAAGGAGTTGGCACAGAAGCAAGCTCAGCACATCTCAGACCTAGTACCTGATCTCCAGTTCATTTTCTTCTGGATGTCCAATGCCATCGAAATACTGTATTTTATCCAGCAGAAGTCTCCTGCGTACATGCAGACTATTGAGCTGATGGACGATAAAGCAGGATCTAAAGAATCTCTCCTCTCAGCAACAATATCAGCAAACGAAGAGGCGATGACCATACTAGAGGAAGTGATCATGTACACCTTTCAGCAGTGTGTCTACTACATCACTAAGACTTTGTACGTTGTGATGCCGGGCCTGTTGGACTGTAACCCGTTTGGGACGGAGTCTTCATCAGAGCAGTGCCGGCGCGCTGCTGGAGTGTGTGTGTGTGCTGTGTGTGTGATGCCAGAGGCGGTTCGCAGGGTGGTGAGTGTGTTTCAGACTACATCAGACCTGCTGCAACAGTACCAGGTTCATTCAGAGATTCAGAGTCAAATGTTCGCCTACCTCTTCTTCTTCACCAATGTCTCACTCTTCAATCAACTCATCGATAAAGGCCCCGCACGCGGCTGGTTTCAGCGTTCTCGGGTCCTGCAGATCCAGGCTAGTGTGAAGATGCTGATGGACTGGGCTAAAGGGGCGGGGCATAATCATCTGGCACAGAAATTCTTTGCCAAGTTCTGTAGTGCAGTGAGCATCCTGGCCACGCCCCCACAACAGCTTTCACAGATGAGTTGGAAATCTTTGTGTGCCGAGCATCCGTCCCTGAAGCCTGTCCAGCTACACAGAATCCTCACACAGTACCAGCTCATGGCTGAGCTCGGCCCTTTACCAATCTGGCAACCCAGCAGTGAAGATGAGGCCTATATCTACAGAACAGTTGATCTACTGGAGAGTTTTGAGAACCACCCTCCTATTGTGCTGCCGAGTGCTGGATTTAAGGTGGACCTGGAGAGTGATTGTGTGGAGGACAGTATATACCGCCAGCTGCTTTACGTTCGTCACTTCCTGTGGGGTCTTCGCACCAAGACCCATCCTTCTAATGGCTGCTCAGACCGGCAGGAAGCTCAG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468080 lncRNA downstream 8163 4362007 ~ 4362238 (-) True G407397
TU468070 lncRNA downstream 20637 4349523 ~ 4349764 (-) True G407387
TU468025 lncRNA downstream 89024 4281164 ~ 4281377 (-) True G407352
TU468021 lncRNA downstream 98229 4271912 ~ 4272172 (-) True G407348
TU468017 lncRNA downstream 102959 4267219 ~ 4267442 (-) True G407344
TU468042 lncRNA upstream 5384 4393404 ~ 4397008 (-) True CI01000299_04398464_04403711
TU468032 lncRNA upstream 22483 4410503 ~ 4413402 (-) False G407359
TU468033 lncRNA upstream 22535 4410555 ~ 4413402 (-) False G407359
TU468034 lncRNA upstream 22535 4410555 ~ 4413402 (-) False G407359
TU468036 lncRNA upstream 22535 4410555 ~ 4413402 (-) False G407359
CI01000299_04242809_04251680.mRNA mRNA downstream 118536 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 130609 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 172517 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04171373_04175441.mRNA mRNA downstream 194960 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04158468_04164223.mRNA mRNA downstream 205686 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04398464_04403711.mRNA mRNA upstream 8454 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04456420_04468754.mRNA mRNA upstream 68209 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 199774 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 215371 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 257619 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
TU467961 other downstream 206077 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2352351 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2489413 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2710401 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3294510 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 87974 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 537948 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1053317 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1430549 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1439816 5835889 ~ 5835989 (-) True G407805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001558 False 3629 mRNA 0.53 15 NC_007112.7 7847820 ~ 7893808 (-)