RNA id: CI01000299_04398464_04403711.mRNA


Basic Information

Item Value
RNA id CI01000299_04398464_04403711.mRNA
length 2602
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000299_04398464_04403711
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4393404 ~ 4403711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGGATCATTCCCAGCATTGTGGGAGGGATCTTGTTGTACTTCTTATCTGATGACCACTGGGAGGAGATCTCAGCATGGCTTTATGGGGCAGGACTATCAAGTCTTTTCATCATATCCACAGTTTTCCATACCGTCTCCTGGAAAAAGAGTCATCTCCGATCGGTTGAACACTGTTTCCACATGTGCGACAGGATGGTGATCTATTTCTTCATTGCTGCATCCTACACACCTTGGCTGACGCTGCGGGAGCTCGGTCCATGGGCTGCCCACATGCGTTGGGTTGTCTGGGTCATGGCCTCTGGAGGAACTGCCTATGTATTCTTCTTCCATGAAAGGTTTAAAGTTGTAGAGCTGATTTGTTACATAGCAATGGGTGTTTTTCCCGCCCTTGTTATTCTCTCTATGGCGGACAGGTCAGGTCTGTGTGAGCTGTTGGCTGGTGGCGGGTGTTATGTGTTGGGCATGGTGTTCTTTAAAAGCGATGGAATAGTGCCCTTTGCTCACGCTATATGGCACCTCTTTGTTGCAATGGGAGCAGGCATCCATTACTATGCCATCTGGAAGTACCTGTACACACCTCTCAATCAACCAACCAGTACGGCCCGGTGACACAAACATGCATACACCTAACCACACAATCATTTGAAGTGCTAAAATTCTAAAATATTGTTTTTTTTCTGTTGTGTTTTTGCTAGCGAACAGTTTGACTGATGTAACTCTTGTCACTTATTAATAGGTCTTTAACTAGCACATACAACAGAAATTACAACTAGCCTTTGTGAGACTACAGGCAAGCAGGGGTCATTTTGGACCTGAAGCCGTGTGCGATCCTGTGACTGATGATAAGGATCCAGAACATGAACATTTCTGGAAAAGACTATGGATGAATTACAGTACATGAAGGTTTACAATTTTTTAAAAAGGTATACACCGAGCAAATGTAAAATCACTGCCAGATATTTGTAAAAACACTCATCCTGGATAGTAATTACTTGACTACAGTTTAAAGGTATTTCTGTAGTGTTTTTTAAATCGATGTGGGACTATTCTGCCAATTCTGCCACTGCCAGTGGGGAGATATTCTTATTTCCTTCAGAAATATGAATATGTTTCGTATTACTGTACACAGTATCGATTCTCCATGCTTCTAGTCTAGTGCAAGTCTGTTGCATTTTTGGATGTGTAATGTCTTTGGAAAATGCCACAAGTGCTTGATGACAATGTCCAGGGAAAGATTTGCCTGGACAGGCCATATGATTTCATGGCTTAAAGGATAAGTTTAGGGTTTTTCGACCACATTATGATTGTGTTTTTTTCTTTCTTTCAGGTAACTTTAAAATATGGTTCATTTGATTAACTAAAATACAATTTAAAAACTATTATTTAATATTTTAAATAATATTAAATTACTAAATCAAATAGGGTTTCAGAAACAAAAAAATATTTAGGAGTTAGGTCACATAGCTCACTTGCATGGGGTTTTAAAGTGCCCCTATTATGCTTTTTTTGGATATTACCTTTCATGCAGTGTTTAATAGAGCCGTTTGTGAAGGTAAAAGGCCTGCAAAGTTTCAAAGATCAAAGTGCACGACAAATAAACTTATTGTCTCCTAAAAGAAAGAATCCATTCTGAACTGAGTCGTCAGCAATTCCTGTCTCACTTCATGTTACAAACCTACATAACAATGTAACTAATTTGCATAACGCCAGCCTATGGTCTTCATTGGCTGCCGGCAAACAGCGTCTACTTTGCCCCACCCTCAAACACTGTAGTTGTAGCTGAGACTGGAAGAGTTTGGTTCGTGTTAAGATGATATTTTCAGTGCTGCGAATCATGGAATTGAACTGGAATTTATACGGTAAAATGGACGCCATCGTTACATTGTTTGTATCACTGTGTATAAAGTGCTGAGGAATCCTCCGGAGCTGAAATTCAGATATGGTAATGGGCGTTTTGTTCCCAACATGTGCTGTAAGTGGTAGACCAATCACAACAGACTGGGCCATCTGACCAATAAGAGCAGAGTAGGCTCTTGAAAAGGAAGGGCTTAGAGAGACAATCTTTGAACGAACCACTTTTAGACTCTTTGAGGAATAAAGTGATGTGCAATCTATATGACAAAATGACAGTGTTTTTTGACTTTAGATGCATGTAAACCTATTGTAGGAGACTCCAAAACTAAATTAGGAACCTTTAAAATAGCATAATAGGGGCACTTTATAGGCTTTTGCCCCGGGCATTCAATTCCAGTGAAAATGTGAAAATAATTTATTTAATTATTTATTTCAACTTTAAGCTGCTGTAGATGTTACATTTTGTATGAATGCTTAACAGGATATGAAAAACAGATACACTGAAAATCGCCAGCTATTTGCCTTTCATGAACAGGAGTAAAAATTACATTTAAAGAGAACACTGGACTGATTTTAGTCAGGTTCACCTTAAAAGTCGCTAAAGGAACGGTTCACCTAAAACTGAAAATTCTCTCATCATTTAGTTCCATACTCGTATGTTTTTGTCTTTCTTCTGTAGATTACTAAATTAAATGTTTAGCAGATTTTCCAGTCTACATTGCATTCTGGCTCCATAAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468080 lncRNA downstream 34236 4362007 ~ 4362238 (-) True G407397
TU468070 lncRNA downstream 46710 4349523 ~ 4349764 (-) True G407387
TU468025 lncRNA downstream 115097 4281164 ~ 4281377 (-) True G407352
TU468021 lncRNA downstream 124302 4271912 ~ 4272172 (-) True G407348
TU468017 lncRNA downstream 129032 4267219 ~ 4267442 (-) True G407344
TU468032 lncRNA upstream 6792 4410503 ~ 4413402 (-) False G407359
TU468033 lncRNA upstream 6844 4410555 ~ 4413402 (-) False G407359
TU468034 lncRNA upstream 6844 4410555 ~ 4413402 (-) False G407359
TU468036 lncRNA upstream 6844 4410555 ~ 4413402 (-) False G407359
TU468037 lncRNA upstream 6844 4410555 ~ 4413402 (-) False G407359
CI01000299_04370401_04385955.mRNA mRNA downstream 8454 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 144609 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 156682 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 198590 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04171373_04175441.mRNA mRNA downstream 221033 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04456420_04468754.mRNA mRNA upstream 52518 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 184083 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 199680 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 241928 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 255184 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
TU467961 other downstream 232150 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2378424 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2515486 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2736474 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3320583 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 72283 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 522257 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1037626 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1414858 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1424125 5835889 ~ 5835989 (-) True G407805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075894 True 771 mRNA 0.47 7 NW_003336455.2 2840 ~ 12775 (-)