RNA id: CI01000299_04456420_04468754.mRNA


Basic Information

Item Value
RNA id CI01000299_04456420_04468754.mRNA
length 2282
RNA type mRNA
GC content 0.39
exon number 10
gene id CI01000299_04456420_04468754
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4456229 ~ 4469450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTTGCACTTGGATCTACCATCCTGTCGTTTCGATCTCAGACATTACAAATGAATTCATAAAGCGCAATATCACACAGAGAAAAAGACAGTAGGTTAGCCTACTCTTGAAAAATTAATACCAAGTAGCCTATAATTAATTGTATGAAATGTAGGCACCTACCGGTAGAAACATAATAGGCCTAATAATTAATAATTAATAATAATAAACAATAATTTGGTGCCTCTGACCATTATTATTACCTATAATTATTATTATTATTATTATTATTTTACTACATTATCATGTAAATCTAGAAACTGAATTAATACCAACATGAAATTAAATTAAGGACATGCATCAGAAAAATTGGGAATGTTGGACAATAAATATATAACAGAATATAACAGCTTGACAGTAAACTGTTTTTGCAGTATTGTCTTATATTAATGTCCGTTAAAGCAAGACTATGTAAACAAAAAATCACAGCCACTGTGTCCAAAAGTGGGAATTATGGGATAACAGACACAGCAATCCTTCATGTTCTATAAGATCATCATATTTGTAGCGTGATCCAGGGGATTAAAACGTATATATTTCAGACCTAGTGGAGTAATTTACTATTACTATTACTGCACTAGGTCTGAAATATTTTTCCTCTTTCCTCCAGTTGATTGTGAAAAAGGTTCTGGAACATTTGCTGTGTTCAGAAGAGCAATGATCTTCCAATACAGTCTGTTATTGATCCTCTGTGGCTTCACTGCACTCTCTGTCTCAACAGAGACATGTGGAAAAGAACTACAAGAGGGAACGTCCTGCATCATTAAGCTACCAGAAAAATACAATGACAAATCTAATGACATAAAATGGACCCATTCCTCCAGTGACGCCATAATTCAGAGGAAAAACAATAAGATGAAGACAAACACTCCAGGTTTAACAATGGAAGAAGATGGATCATTAAGATTTCAAAGTGTGAAGGCCCAGGTCTTGGTAAACACTTTGGCTTGGATTTCTGGATCATGGTGCAAAAAGCTCCAACAAGGCCAAGATAAGACAGAGTTCACGCTAGCAGATCTTACCCCAGTTGATTGTGAAAAAGGTTCTGGAACATTTGCTGTGTTCAGAAGAGCAATGATCTTCCAGCACAGTCTGATATTGTTCCTCTGTGGCTTCACTGCACTCTCTGAGACATGTGGAAAAGAACTACAAGTGGGAACGTCCTGCATCATTAAGCTACCAGAAAAATCCAATGAAAAATCCAATGACATAAAATGGGCCCATTTCTCCAGTGACGCCGTAATTCAGAGGAAAAACAATAAGGTGAAGTCAAACACTCCAGGTTTAACAATGGAAGAAGATGGATCATTAAGATTTCAAAGTGTTAGTCTGAAGGACACGGGCACATATATATACACTGTTACTAGTTCTGATGGTACAGAGATTGATAAAGGAGAAGCAGAAATTAAAGTATATGAAAAGGTCCCTAAACCTACTGTGAAGATCAACTGCACCGCTGATGGGAATGCTACTCTCACCTGTGACGTGGAAAACAATAAAGATCTGAGTTTGAATGTATCCTGGTATGAAGATGGAAAACTCATCCAGAATGAAATAAATCCTCAAGTGTTCTTGTCATCTACTCAAGTACAGGAGTATAAAACATACTCATGTGAGACACACAATCCTGTCAGAGTTAAAAGTGAGAGTGTTACTGTATCATGTGGAAACCTTGTCCTTGGCTTTGACTGGATCATATTGAGCATCCTAGCCGGCGGAGGAGCCCTTCTGCTGCTAATATGTGTTCTCCTCATCTGTGTGTGTCGCAGACGTCAGCGACGCAAAAAGTATCAAGATGAGGAAGAGTTCAGGCTAGCAGATCTTACCCCAGGTCACACCGATACAAACAGATCCAAACAGACCTCTGGAGGCCAACTGGCGCCCCCCATCTCGCAAGAAGACCCCATGCCCCGCAGCCCATCTCTGCAAACCTCGCCTCAAACCCCATCTCAACCCGAAGCCCAGATCCTTGCTCAACCCCCATCACCGCTTCAGGATGAGGATCAGGAAAATCAGACTCCCATACCTCACCCGAGGACCAAACAGCACTGAACCAAGAGAAATCAAGAGCCGTACTGTTCACTGAATGATAGTATATGGGACTTTCCTAGAATGATTACAAGCATTTTGGTGGTAAGCATTTTACAACCTGTGCGCTATTACTCCTTCTGTAAGTCTTCTGAAGTCAATTTGTCCTGATTTACAATGTAAAATATTGACTTTTTTGTTTGAGATTAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468089 lncRNA downstream 549 4455446 ~ 4455680 (-) True G407406
TU468032 lncRNA downstream 42827 4410503 ~ 4413402 (-) False G407359
TU468033 lncRNA downstream 42827 4410555 ~ 4413402 (-) False G407359
TU468034 lncRNA downstream 42827 4410555 ~ 4413402 (-) False G407359
TU468036 lncRNA downstream 42827 4410555 ~ 4413402 (-) False G407359
TU468099 lncRNA upstream 562 4470012 ~ 4470215 (-) True G407409
TU468106 lncRNA upstream 9539 4478989 ~ 4554077 (-) True G407414
TU468108 lncRNA upstream 11419 4480869 ~ 4481664 (-) True G407416
TU468123 lncRNA upstream 35260 4504710 ~ 4563664 (-) True G407422
TU468132 lncRNA upstream 39672 4509122 ~ 4514347 (-) True G407429
CI01000299_04398464_04403711.mRNA mRNA downstream 52518 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 68209 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 204364 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 216437 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 258345 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04587880_04594059.mRNA mRNA upstream 118344 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 133941 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 176189 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 189445 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 239053 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
TU467961 other downstream 291905 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2438179 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2575241 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2796229 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3380338 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 6544 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 456518 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 971887 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1349119 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1358386 5835889 ~ 5835989 (-) True G407805

Expression Profile