RNA id: CI01000299_04496757_04504238.mRNA



Basic Information


Item Value
RNA id CI01000299_04496757_04504238.mRNA
length 1450
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000299_04496757_04504238
representative False

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4496386 ~ 4504483 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAACAACTACTGTTTTGTCCTGGCAAAAAAGACCCAGCACCCAGATTTGTAATGTTGAGGCATAGAGCGCCCCCTGGCGAACGAGCTCTGATCTGCCATCATCTCGCGTGGTCGTGGTTGGTAGTCTTGCTGCTGGACACACTTGTGCCAGACATCGATATCAAACATTTGCAAAGGACGTACACCAGAGGGCAGCAGTAACTCTTTGCTTATATTAGTGAAGGACCAACACATCAATACTTCATGGTTACAGTGTTTCTTTTTGAGCTTGCTATACATCATTCTCACACCGCGTGTCGGGCGTGTTCGCGTGCCTGATCAAAATCTAGAAGAAAAGTGAATTAAAGTGTATTTTTTTCTAACAAAATGTCACTTCAACGTTTGACGTTGGTCATTGTGTTCATCACCTCAGAAACCGTTTCAGGTGAAGGTGTGTTTAAAGCAGTGGGTGAACAAGTTTCTTTTCGTCCAGACAAACCTCTTCCTTCTCCTGTCACCAGCATCATCTGGAAACACATAAACAGTGTTGGAACTGTTGTCAAGGCGATTGAATGGGATGAAGGAGAAATTCTAATCCCGAATCCGAGATTCAAAGACATCACAACTGTTGATGAGAAGACTGGACAAATTAATATAACTAACTTAAAAGTCGAACATAGTGGAGTTTATACCATTGACATCAACAGTAAAGAGCAGGAACAAAGATTCACCTTGACTGTTATGGAGCGGGTCCCCAAACCTGTCATAGAACGAGAGATAATCAAAAATAACATTGTATTTGTGAATTTAACATGCAAGTACAATGAAATGATCACCTGGAAGAATTCTACTGGACAAATACTGCCGGGTTTAGCGCTCCATCCAAAAGGAGAGTTTATCACAGTTAAAAAAACAGCAAATCTGAGCAACTTCTACACCTGTACACTGACGAACGCAGTGAGTGAGGAGACCAGTGATCCGGTCTATGAGAGAGATCTGTTTAAAGCCACATGCAACAGAAAAGGAAAAGCTGTGGGCACCGGTGCAGCTAATAAAGCCTGTGAGAGAATCCTGATTGGGTGGATGGAGCTTGGAAATGAACAAGCTATGAGGGGTGTGGCACTTGCCACATGGTTGTCATGTGACACACTAAGTAACAGTTGTGAGTGTATGATTGATGCTGCCACAGTTCTGCTCATCATGGATCATCTGGAGCTCTAAACCATCTGTGCCTTCATAACTTTGACTGTTTTTCAACTTTGTTGTTTTTTTTATCTTTCTGTTTGCTGGGCCACATAAACGGTGTTGGAAGTTCATAGTCAGGTTATTAATTTATGAATGTAAATATGCATGTTAAATATGTAGATACTTTGTGTTCAAAGAGGGATGAGATGAGAATCTCTTACTGGCACCAAACAGAGTTTTGAAGACTTGATTAGAGTGATTGTATATAAATGTACTGTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466453 lncRNA upstream 40701 4455446 ~ 4455685 (+) True G405932
TU466452 lncRNA upstream 42517 4453592 ~ 4453869 (+) True G405931
TU466393 lncRNA upstream 47391 4418304 ~ 4448995 (+) True G405876
TU466429 lncRNA upstream 81375 4414792 ~ 4415011 (+) True G405912
TU466427 lncRNA upstream 93080 4400579 ~ 4403306 (+) True G405910
TU466377 lncRNA downstream 145453 4649936 ~ 4665044 (+) False G405865
TU466398 lncRNA downstream 153858 4658341 ~ 4663395 (+) True G405881
TU466381 lncRNA downstream 159451 4663934 ~ 4665044 (+) True G405865
TU466489 lncRNA downstream 166732 4671215 ~ 4671482 (+) True G405966
TU466490 lncRNA downstream 167042 4671525 ~ 4671895 (+) True G405967
CI01000299_04480751_04492829.mRNA mRNA upstream 3270 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04472181_04474247.mRNA mRNA upstream 22115 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04269257_04269673.mRNA mRNA upstream 226621 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 232893 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 362584 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04513358_04524537.mRNA mRNA downstream 8875 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 27615 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04554181_04557794.mRNA mRNA downstream 49628 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04703290_04704365.mRNA mRNA downstream 198588 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 232323 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
TU466350 other upstream 176245 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 362445 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1341212 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3890036 604870 ~ 606350 (+) True G403972
TU463930 other upstream 4085598 364139 ~ 410788 (+) True G403609
TU466374 other downstream 197899 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 419979 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 866698 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1733355 6237838 ~ 6300508 (+) True G406161

Expression Profile