RNA id: TU466395


Basic Information

Item Value
RNA id TU466395
length 325
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G405878
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4509933 ~ 4510740 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACCTGTACACTGACGAACGCAGTGAGTGAGGAGACCAGTGATCCGGTCTATGAGAGAGATCTGTTTAAAGGTTTAAACAGGAGATTTGTCATTTGGATTGTCATCGTTTTGATCTGCATGGTTTTTATCCTCCTTTTCCTCTTTATACCACCTTTATAAGGTTATTGTGCTGATTTCTGTGAGAGACACAAGACGTCCAGAAAATGACATTCATGAGTGAATGACTGATGCTCATCATGAACCTTGTGACTCTTCAAATGCAAAGCCACACGTGGATCTTCTCGACACATTTGTCTGATCATCGGCTCTAAATCCCAGATTTACTGAAACATCTGGAGCTCTGAACCGTCTGTGCCTTCATAATTTCATAACTTTTACTGTTGATCTTTGATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466453 lncRNA upstream 44152 4455446 ~ 4455685 (+) True G405932
TU466452 lncRNA upstream 45968 4453592 ~ 4453869 (+) True G405931
TU466393 lncRNA upstream 50842 4418304 ~ 4448995 (+) True G405876
TU466429 lncRNA upstream 84826 4414792 ~ 4415011 (+) True G405912
TU466427 lncRNA upstream 96531 4400579 ~ 4403306 (+) True G405910
TU466377 lncRNA downstream 139196 4649936 ~ 4665044 (+) False G405865
TU466398 lncRNA downstream 147601 4658341 ~ 4663395 (+) True G405881
TU466381 lncRNA downstream 153194 4663934 ~ 4665044 (+) True G405865
TU466489 lncRNA downstream 160475 4671215 ~ 4671482 (+) True G405966
TU466490 lncRNA downstream 160785 4671525 ~ 4671895 (+) True G405967
CI01000299_04480751_04492829.mRNA mRNA upstream 6721 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04472181_04474247.mRNA mRNA upstream 25566 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04269257_04269673.mRNA mRNA upstream 230072 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 236344 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 366035 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04513358_04524537.mRNA mRNA downstream 2618 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 21358 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04554181_04557794.mRNA mRNA downstream 43371 4554111 ~ 4557840 (+) True CI01000299_04554181_04557794
CI01000299_04703290_04704365.mRNA mRNA downstream 192331 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 226066 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
TU466350 other upstream 179696 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 365896 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1344663 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3893487 604870 ~ 606350 (+) True G403972
TU463930 other upstream 4089049 364139 ~ 410788 (+) True G403609
TU466374 other downstream 191642 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 413722 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 860441 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1727098 6237838 ~ 6300508 (+) True G406161

Expression Profile