RNA id: CI01000299_04554181_04557794.mRNA



Basic Information


Item Value
RNA id CI01000299_04554181_04557794.mRNA
length 908
RNA type mRNA
GC content 0.38
exon number 6
gene id CI01000299_04554181_04557794
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4554111 ~ 4557840 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAGACATTCTGAGAAAAATATACTGTCAAAGAAAAGTGTATGAACGTGTAATTTGTCTAACAAATATGTCACTTCGATGCTTGACGCTGGTTGCCATCGTTGTGTTCATCACCACAGAAGCTGTTTCAGATGAAGATGTGAAGAAAGCAGTGGGTGATCAAGTTTCTTTTCGTCCAGACAGATCTCTTCGTTCTCCTGTCACCAGCATCATCTGGAAACACAGAACCACTGGAGGAATTGTTGTGAAGGCGATTGAATGGGATGAAGGAGAAATTCTAATCCCGAATCCAAGATTCAAAAACATCACAACTGTTGATGAGAAGACTGGACAAATCACTATAACTAATTTAAATTACAGCCATAGTGGAGTTTATACCATTGACATCAACAGTAAAGAGCAGGAACAAAGATTCAACTTGACTGTTATGGAGCGGGTCCCCAAACCTGTGATAAAAACAGAGTGGAGTAAAGTTAACCCTGATGTTGTGTATTTAATATGCGAGTACAATGAAACAATTATCTGGAAGAATTCTGCTGGAGAAAAACTGAATGGTTCAGAGCTCCATCCGAAAGGAAAGACTTTAGTAGTCAAAAACGGAAATCCAGAAAACTTCTACACCTGTACACTAGATAACGGCGCAAGTGAAGAAACCAGTGATCCGGTCTATGAGAGAGATCTGTTTGAGGATTCAAACAGGGGATTTGTCATTTGTATTTCCATCGTTTTGATCTGCAAGGTTCTTTTCAGCTTTTTCCTGTTTATACCAACTTTATATGGTTATTGTGCTGATTTCTGTGAGAGACACAAGACCTCCAAAACGCTGTTGGAAATTCATTCTGAGGTTCTGAATATATGAATCTACTGTAACATATCTGCAAATAGTGACAAGATGAATCTATCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466460 lncRNA upstream 3312 4475988 ~ 4550799 (+) True G405938
TU466395 lncRNA upstream 43371 4509933 ~ 4510740 (+) True G405878
TU466453 lncRNA upstream 98426 4455446 ~ 4455685 (+) True G405932
TU466452 lncRNA upstream 100242 4453592 ~ 4453869 (+) True G405931
TU466393 lncRNA upstream 105116 4418304 ~ 4448995 (+) True G405876
TU466377 lncRNA downstream 92096 4649936 ~ 4665044 (+) False G405865
TU466398 lncRNA downstream 100501 4658341 ~ 4663395 (+) True G405881
TU466381 lncRNA downstream 106094 4663934 ~ 4665044 (+) True G405865
TU466489 lncRNA downstream 113375 4671215 ~ 4671482 (+) True G405966
TU466490 lncRNA downstream 113685 4671525 ~ 4671895 (+) True G405967
CI01000299_04532498_04539703.mRNA mRNA upstream 14192 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
CI01000299_04513358_04524537.mRNA mRNA upstream 27434 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04496757_04504238.mRNA mRNA upstream 49628 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04480751_04492829.mRNA mRNA upstream 60995 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04472181_04474247.mRNA mRNA upstream 79840 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04703290_04704365.mRNA mRNA downstream 145231 4703071 ~ 4704597 (+) False CI01000299_04703290_04704365
CI01000299_04736806_04740333.mRNA mRNA downstream 178966 4736806 ~ 4740975 (+) True CI01000299_04736806_04740333
CI01000299_04819297_04829755.mRNA mRNA downstream 260845 4818685 ~ 4829987 (+) True CI01000299_04819297_04829755
CI01000299_04864582_04885052.mRNA mRNA downstream 306352 4864192 ~ 4885385 (+) True CI01000299_04864582_04885052
CI01000299_04892566_04900169.mRNA mRNA downstream 332551 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
TU466383 other upstream 48194 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 233970 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 420170 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1398937 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3947761 604870 ~ 606350 (+) True G403972
TU466374 other downstream 144542 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 366622 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 813341 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1679998 6237838 ~ 6300508 (+) True G406161

Expression Profile