RNA id: CI01000299_04587880_04594059.mRNA


Basic Information

Item Value
RNA id CI01000299_04587880_04594059.mRNA
length 2388
RNA type mRNA
GC content 0.46
exon number 16
gene id CI01000299_04587880_04594059
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4587794 ~ 4594120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTCCTCCCTAATTTTCCCAGAACACCTCCCCATTAAACAGGTGAGATGGCAGGGTATAAATGTGTGAACCAGTTTTGGACACACAGGGACTTCTGTCTCCAAAAGGCTCCAAGACAGGGGGACTAACCAGACTCCTGAAATCATTGGATTTTAGGTGGACATCAAGAAGAAAAATGGGGCTCGGGACGGGGAATGATAACTACAAATTGGCAGCAACTTCAGAAGATGGAGTCAAAAAGCCAAAAAGGGGGAAAAAGAATAAAAAGGACATGGAGGAACTTAAGAAAGAAGTGGAGCTGGAAGACCACAAGTTGACATTTGAAGAGCTTAATCGAAAATACGGCACTGATCTGACCAAGGGTTTGTCCATTTTCCGAGCAAAGGAAATCTTAGCCCGTGATGGACCAAATTCCTTGACTCCACCTGTTACGACTCCAGAATGGGTCAAGTTCTGCAGACAGCTCTTTGGTGGTTTTCAAACTCTGCTGTGGATTGGTGCCTTTCTTTGCTTCTTTGCATATTCAATCCAGGCTGCCTCTTCTGAAGAACCGGCAAATGACAATCTGTATCTGGGACTTGTGCTTGCTTTTGTTGTCACAATCAATGGATGCTTCTCATACTATCAAGAGCATAAGAGCTCTAGGATCATGGATTCTTTTAAGAACCTCGTTCCTCAGCAAGCCCTGGTTGTGCGTGATGGAGAGAAAAATATCATCAATGCTGAGGAGGTAGTCGTTGGTGATCTTGTGGAGGTCAAAAGTGGAGACCGAATTCCAGCTGATATTCGTGTCATCTCTGCACAAGGATGCAAGGTGGACAACTCTTCCCTCACTGGTGAATCTGAACCCCAGAGTCGTACTCCTGACTTTTCTAGTGAAAACCCCTTGGAGACAAGAAACATTGCATTTTTTTCTACCAACTGTGTTGAAGGTACTGCCAGAGGGATTGTCATCAACACCGGTGACCGTACCGTCATGGGTCGTATTGCCACTCTTGCCTCCAGCCTGGAAGGTGGACAGACACCAATTGCTAAAGAGATTGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGCGTGACCTTCTTAATCTTGTCCCTGATCCTTGGCTACAATTGGTTGGAAGGGGTCATTTTCCTGATTGGAATCATTGTCGCTAATGTGCCTGAAGGTCTCCCTGCCACTGTAACTGTGTGTCTAACTCTGACTGCCAAACGAATGGCAAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCATATTCATATAGCAGACACCACAGAGAACCAGACTGGAACCGCATTTGACAAGAGCTCTGCTACTTGGTCTGCTCTTGCACGTGTTGCTGGCTTGTGCAATCGTGCTGTCTTCCAAGCAAATCAGAGCCATCTCCCAGTCCTTAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGATGTTTCCAAACAGGCTGCTGACATGATTCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACGTTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCTTTTTTGTCCTTGTCGGTATTCCTCTACCTTTGGGCACCGTCACCATTCTCTGCATTGACCTGGGCACTGACATGGTTCCTGCTATCTCATTGGCCTATGAAACTGCCGAAAGTGACATCATGAAGCGACAACCCAGAAACGCTGAAACAGATAGGCTGGTGAATGAGAGGCTAATCAGTATGAGCTATGGACAAATTGGTATGATGCAAGCAGTTGGCGGGTTCTTTACCTACTTCGTAATTCTTGCTGAGAATGGATTCTTGCCCTGGGATCTGGTAGGAATTCGATTGGGCTGGGAAGACAGATTTCTCAATGACCTGGAAGACAGCTATGGCCAACAATGGACCTATGAGCGCAGAAAGATTGTGGAGTACACATGCCACACAGCCTTCTTTACCAGTATTGTGATTGTGCAGTGGACCGACTTGCTCATCTGCAAGACCAGAAGGCTTTCCATCCTACAGCAGGGAATGAAGCCAATGTGGTGGTTCTGTGCCTTCCCATATTCCCTGCTCATTTTCATCTATGATGAAGTTAGAAAATACCTCCTTAGGCAGAGCCCAGGAGGCTGGGTGGAACAAGAAACATACTACTAAAAGAAGAAGACTTTCTGTCGGGAACATGTGCAAAGGGACGTATCATTTTGAAAATATCAAAATTAATGTCAGTTTAAGTTAATAAA

Function

GO:

id name namespace
GO:1903416 response to glycoside biological_process

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468120 lncRNA downstream 1746 4571131 ~ 4586048 (-) True G407420
TU468123 lncRNA downstream 24130 4504710 ~ 4563664 (-) True G407422
TU468106 lncRNA downstream 33717 4478989 ~ 4554077 (-) True G407414
TU468137 lncRNA downstream 39988 4523411 ~ 4547806 (-) True G407434
TU468132 lncRNA downstream 73447 4509122 ~ 4514347 (-) True G407429
TU468172 lncRNA upstream 42490 4636610 ~ 4637425 (-) True G407467
TU468183 lncRNA upstream 82990 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 83898 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 110004 4704124 ~ 4704801 (-) True G407475
TU468257 lncRNA upstream 227921 4822041 ~ 4823551 (-) True G407526
CI01000299_04456420_04468754.mRNA mRNA downstream 118344 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 184083 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 199774 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 335929 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 348002 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04603421_04609353.mRNA mRNA upstream 9271 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 51519 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 64775 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 114383 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04741460_04746667.mRNA mRNA upstream 147327 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
TU468104 other downstream 37073 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 423470 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2569744 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2706806 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2927794 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 331848 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 847217 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1224449 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1233716 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1937881 6532144 ~ 6534655 (-) True G407899

Expression Profile