RNA id: CI01000299_04645836_04651938.mRNA


Basic Information

Item Value
RNA id CI01000299_04645836_04651938.mRNA
length 3272
RNA type mRNA
GC content 0.47
exon number 21
gene id CI01000299_04645836_04651938
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4645639 ~ 4651938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGGTCGAGAACAATATGAGCTGGCGGCCACCTCTGAGCAGGGGGGCAAGAAGCCAAAACCTAAGGGCAAGAAAGAGAAGGATAAAGACATGGATGAACTCAAAAAAGAGGTGGACTTGGATGATCACAAACTGACCCTGGATGAACTTAATAGGAAATATGGCACTGATTTAACCAGGGGATTGTCAGCCACACGTGCTAAGGAGATCTTGGAACGTGATGGGCCCAATGCTTTGACTCCACCTCCAACAACCCCAGAATGGGTCAAGTTCTGCAAGCAGCTCTTTGGAGGATTCTCAACTCTCCTGTGGATTGGAGCCATCCTTTGTTTTCTTGCCTACGGCATCCAGGCGGCCTCCGAGGAGGAACCTGCCAATGATAACTTGTATCTGGGTATTGTGCTCTCTGCTGTTGTGATGATCACTGGATGTTTCTCATACTATCAAGAGGCCAAGAGCTCCAAAATCATGGACTCTTTCAAGAACCTTGTCCCTCAGCAAGCCTTGGTTATCCGTGATGGTGAGAAGAAGAATATCAATGCTGAAGAAGTTGTGATTGGAGATCTTGTGGAAGTCAAAGGTGGTGACAGAATTCCTGCTGATCTGCGCATCATTTCTGCTCATGGATGCAAAGTGGACAACTCCTCCCTCACTGGTGAATCTGAGCCCCAGAGTCGTACTCCTGACTTCTCCAATGAAAACCCACTTGAGACCAGGAACATTGCGTTCTTCTCTACCAACTGTGTTGAAGGTACTGCCAGAGGTGTCGTCATCAACACTGGTGACCGCACTGTCATGGGTCGTATCGCCACTCTTGCTTCTGGTCTTGAAGTTGGTCGCACTCCGATCTCAATAGAGATTGAGCACTTCATCCACATCATCACTGGTGTAGCTGTCTTCCTGGGCGTGTCCTTCTTTATCCTCTCTCTGATCCTTGGATACTCTTGGCTGGAAGCTGTCATCTTCCTTATTGGTATCATTGTCGCTAATGTGCCAGAGGGTCTATTGGCTACAGTAACTGTGTGTCTAACTCTGACTGCCAAACGAATGGCAAAGAAGAACTGCTTGGTGAAGAATCTGGAAGCCGTAGAGACTCTTGGCTCGACCTCCACCATCTGCTCTGACAAGACTGGAACTTTAACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCAGACACCACAGAGAACCAGAGTGGAACCTCATTTGACAGGAGCTCTGCTACTTGGGCTGCCCTCGCACGTGTCGCCGGTCTGTGCAACCGTGCCGTCTTCCTTGCTGAGCAAGAAAATATCCCAATTCTTAAGAGAGACGTGGCTGGTGACGCCTCTGAATCTGCCCTGCTGAAGTGTATCGAGCTCTGCTGTGGATCAGTGAAAGAGATGAGAGAAAAATACAACAAGATTGCTGAGATCCCATTCAACTCTACCAACAAATACCAGCTCTCCATCCATAAGAACATCAATACCAATAAAACTGAAACCAATCACCTGCTGGTAATGAAAGGTGCTCCTGAGAGGATCCTGGACAGGTGCACCTCTATTTTGATCCAAGGAAAAGAGCAGCCACTTGATGATGAGATGAGGGACGCCTTCCAGAATGCATACTTGGAACTTGGTGGCCTTGGAGAAAGAGTACTAGGATTCTGCCACTTCAACCTTCCTGACGAACAGTTTCCCGAGGACTTCCAGTTCGATACAGAGGAGGTGAACTTCCCCACTGAGAACCTGTGCTTCATTGGCCTTATGTCCATGATTGATCCTCCTCGTGCTGCTGTACCAGATGCTGTGGGCAAATGTAGGAGTGCTGGAATAAAGGTTATCATGGTTACTGGTGATCATCCAATCACAGCCAAGGCCATTGCCAAGGGAGTGGGTATCATTTCCGAGGGCAACGAGACCGTTGAAGACATTGCTGCTCGCTTGAACATTCCTATTAATGAGGTCAACCCAAGGGATGCCAAGGCTTGTGTGATCCATGGAGGTGACCTGAAGGATCTGACCCCTGAGCAATTAGATGACATCTTGAAGTACCACACAGAAATTGTGTTTGCCAGAACATCTCCTCAACAGAAGCTGATTATCGTTGAAGGCTGTCAGAGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCCCCTGCTCTGAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGATGTTTCTAAACAGGCTGCTGACATGATTCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACCCTGACCAGTAACATCCCTGAGATCACCCCCTTCCTCTTCTTCATCATTGCCAACATCCCTCTTCCTTTGGGTACAGTCACCATTCTCTGCATTGACCTGGGAACGGACATGGTTCCTGCCATTTCATTGGCCTATGAAGCTGCTGAGAGTGACATCATGAAGCGTCAACCCAGAAACCCCAAGACTGACAAACTTGTAAATGAGAGACTCATTAGCATAGCCTACGGTCAGATTGGTATGATTCAAGCTCTGGCCGGGTTCTTCACATATTTTGTCATCTTGGCTGAAAACGGCTTCCTTCCATCGTCATTGCTGGGCATTCGAGTGCTCTGGGATGACAAATACATCAACGACCTGGAGGACAGTTATGGCCAGCAATGGACATACGAGCAGAGGAAGATTGTAGAGTTCACATGCCACACGGCCTTCTTCACCAGTATTGTAATAGTACAGTGGGCTGATTTGATCATCTGCAAGACCAGAAGAAACTCAGTCTTCCAGCAAGGAATGAAGAATAAGATTCTCATCTTTGGACTGTTTGAAGAAACAGCTCTTGCAGCTTTTCTGTCCTACTGCCCAGGCATGGATGTTGCCCTCAGAATGTACCCATTGAAACCAAACTGGTGGTTCTGCGCCTTCCCCTACTCACTCCTCATCTTTATTTATGATGAAATTCGAAAACTTATCATCCGACGCAGCCCAGGAGGTTGGGTGGAGAGGGAGACCTACTATTAAAGCATCCAGTCTGCATCACACAAGTTTATTTGCATGGTTGTCTCGCTGCTCGGAATTTTAACCTCCGTAATTTGGATGTTTTTATATAGGGAATGCTTGATACAAACACTGAGATCGTGAACCAAGACATTGCGTGCCTTGTTTCCGAAGCCGGACCAATTTTATACATGTTTTTAAAAGTGTAATATAAAAATAAA

Function

GO:

id name namespace
GO:0060974 cell migration involved in heart formation biological_process

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468172 lncRNA downstream 8214 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 59591 4571131 ~ 4586048 (-) True G407420
TU468123 lncRNA downstream 81975 4504710 ~ 4563664 (-) True G407422
TU468137 lncRNA downstream 97833 4523411 ~ 4547806 (-) True G407434
TU468132 lncRNA downstream 131292 4509122 ~ 4514347 (-) True G407429
TU468183 lncRNA upstream 25172 4677110 ~ 4677446 (-) True G407476
TU468184 lncRNA upstream 26080 4678018 ~ 4678228 (-) True G407477
TU468182 lncRNA upstream 52186 4704124 ~ 4704801 (-) True G407475
TU468257 lncRNA upstream 170103 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 287753 4939691 ~ 4939939 (-) True G407562
CI01000299_04603421_04609353.mRNA mRNA downstream 36286 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 51519 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04456420_04468754.mRNA mRNA downstream 176189 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 241928 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 257619 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04658984_04668843.mRNA mRNA upstream 6957 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 56565 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04741460_04746667.mRNA mRNA upstream 89509 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04861862_04862244.mRNA mRNA upstream 209639 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 261435 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
TU468104 other downstream 94918 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 481315 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2627589 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2764651 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2985639 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 274030 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 789399 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1166631 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1175898 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1880063 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000066 False 3506 mRNA 0.48 22 NC_007112.7 1712140 ~ 1731564 (+)
bowfin (Amia calva) AMCG00014556 True 5119 mRNA 0.42 22 CM030128.1 17484850 ~ 17500956 (-)