RNA id: CI01000299_04708767_04714088.mRNA


Basic Information

Item Value
RNA id CI01000299_04708767_04714088.mRNA
length 846
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000299_04708767_04714088
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4708503 ~ 4714088 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTACAAAGTGCAACAACTTCTGCCTGGTGGCCACACCAGTGGATCATGACATATTCATTCGGACACAGATTCGGGAGCAGTTTGAGGCTTTGTTCCGCGCATTTGATCCAGGCACATCGTTCCAGTTCTTCAAAAGCTTCAGACGAGTTCGGATCAACTTCACCGATGCTTTAGCAGCAGCCGAGGCCCGAGTCAAACTCCATAAGAGTGACTTCAATGGAAAGGAGATGCGTCTGTATTTTGCTCAGTCGGTACATATTGGCAGTCCTCGCCTCGAGCCTCCTAAACCAGAGAAGCAGTTCCTCATCTCCCCGCCGGCATCGCCCCCTGTAGGCTGGGCGCAGTCGCAGGATGCTATGCCCGTCCTCAACTACGACCTGCTGTGTGCTGTGTCTAAACTAGGACCAGGTGAGCAGTACGAGATCCACACTGGAACCACCAACACTCCCAGCGTCATCGTGCACGTGTGTGAGGACGAAAGCTCTGAGGACGAGGAGGAAGCAGCAGAAAGCGGCAAACGCGCCCGACCCAAGATCATCCAGACCCGTCGCCCAGACTATGTCCCGTCCGTTAACCAGTGAGCGGACATTCTGGGCCGTTTCATCTTTGCGACCAACGCTGGAATAACTAGGAAACATGCAGTCATGCAGTTTGTCATCCTTACCACCCGGGGCGGTGGTGAGCGTCAAATTCTCTTCCTAGTTAGCGAGGGAGTCAACCATCCTCATAATCTCGCGTTTCATTTCTTAACATCCATCTCTGATGGAGTCAGGGACTTGGGAGAGTTTCTCTCGTATTATGAATGTCATTATTTGCTTGACGTCACAACTGTGTATTTTAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468182 lncRNA downstream 3702 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 30275 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 31057 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 71078 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 122455 4571131 ~ 4586048 (-) True G407420
TU468257 lncRNA upstream 107953 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 225603 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 242010 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 243899 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 371306 5085394 ~ 5182362 (-) False G407591
CI01000299_04658984_04668843.mRNA mRNA downstream 39481 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 56565 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04603421_04609353.mRNA mRNA downstream 99150 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 114383 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04456420_04468754.mRNA mRNA downstream 239053 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04741460_04746667.mRNA mRNA upstream 27359 4741447 ~ 4746667 (-) True CI01000299_04741460_04746667
CI01000299_04861862_04862244.mRNA mRNA upstream 147489 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 199285 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05379545_05381902.mRNA mRNA upstream 665061 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 705315 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
TU468104 other downstream 157782 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 544179 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2690453 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2827515 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3048503 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 211880 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 727249 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1104481 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1113748 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1817913 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00075994 True 5903 mRNA 0.37 4 NW_003334033.1 8882 ~ 24012 (+)