RNA id: CI01000299_04741460_04746667.mRNA


Basic Information

Item Value
RNA id CI01000299_04741460_04746667.mRNA
length 1040
RNA type mRNA
GC content 0.45
exon number 5
gene id CI01000299_04741460_04746667
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4741447 ~ 4746667 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCACTGTCGTCAAGCCTACAGACTCAGAGATGGCGCTGGACCAAGATCCAAGGAGAACTGGCACAGATGAAATAAACACAGCAAGAGCAAAGCTACTGAGGACCGGACCAATGACGACATTTCCCGACGGAGATGGAAAGACTGTAGTGATGAGAGCTTTAGACGAAATAATTACAGCGACAAGTAGCCCAAATGTCAGAGACAAAACAGGTATCAATAATCTATTAAAGACACTAACACTCCTTTCTGACGGACACGAGGAGATTGATGGATCTCTGAGGACAGACCGCACAACCAGTTCCCCTGATTCCCAGCGGCAAACGGAGAAGAACAGACTGTTCAGGCTGTCAGAGGTGATTGGGTCAAACGAGCACGACGACACTCCAACAGCAGCCAAACAATCCAAGCCTGATCCTGTCACGGGTGATCCTGAGGCTCGAGAGGAGCTGGTGAAGATGTTGAGTGCACTTGAAGAGCTTCACAAGTTAATGAACCGCACACTGAGGCATCGAATCACCATCATACCCAGAGGAAATAGCAATGGGCGAGGTACTGGGAAAAAGAACAAAATGGTAGTGACAGATGGAAACCTGAAATCCACCACAGCGACCACTATAGACAGCGGTGGAATTTCACCGAAGGCCAGCACTGACCAGATGGATCCCAAACTCAATGGAAAAGCCTTTAAAAAGTCTGTTCCATCAGCTAAGAAACCCAACAAAAGAGATACAAAGACAAAAAAAAACACCAATACATTAACTACTGCTTATCTTTCTCCAAAAAAACAGTGTGCTTCTGGAAGTACTGCTCTCAGAACTGAGCTTCGCCTAGATGAGCGACAGATTTCACCCTCATTTCACCAACCTTTGAAATGCCAAGCAACAAATCCTGTTCTCAAACATAGATGCTTAAACTCTTCTCAATGGACCATCAATAACATGACTGACCGCTCTGACCCCTGTGACGTGTGTACCCTTGATTTTGTGCACGAAATCCTGTTAACCTTCTATCAACAACACCAATAAAAATTCCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468182 lncRNA downstream 36646 4704124 ~ 4704801 (-) True G407475
TU468184 lncRNA downstream 63219 4678018 ~ 4678228 (-) True G407477
TU468183 lncRNA downstream 64001 4677110 ~ 4677446 (-) True G407476
TU468172 lncRNA downstream 104022 4636610 ~ 4637425 (-) True G407467
TU468120 lncRNA downstream 155399 4571131 ~ 4586048 (-) True G407420
TU468257 lncRNA upstream 75374 4822041 ~ 4823551 (-) True G407526
TU468295 lncRNA upstream 193024 4939691 ~ 4939939 (-) True G407562
TU468297 lncRNA upstream 209431 4956098 ~ 4956365 (-) True G407564
TU468298 lncRNA upstream 211320 4957987 ~ 4996909 (-) True G407565
TU468329 lncRNA upstream 338727 5085394 ~ 5182362 (-) False G407591
CI01000299_04708767_04714088.mRNA mRNA downstream 27359 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
CI01000299_04658984_04668843.mRNA mRNA downstream 72425 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04645836_04651938.mRNA mRNA downstream 89509 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04603421_04609353.mRNA mRNA downstream 132094 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04587880_04594059.mRNA mRNA downstream 147327 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04861862_04862244.mRNA mRNA upstream 114910 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_04913779_04927715.mRNA mRNA upstream 166706 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_05379545_05381902.mRNA mRNA upstream 632482 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_05419449_05423414.mRNA mRNA upstream 672736 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05428160_05443433.mRNA mRNA upstream 680994 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
TU468104 other downstream 190726 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 577123 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2723397 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2860459 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 3081447 1659655 ~ 1660000 (-) True G404784
TU468235 other upstream 179301 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 694670 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1071902 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1081169 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1785334 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000062 True 1060 mRNA 0.45 5 NC_007112.7 1599979 ~ 1614500 (+)