RNA id: CI01000299_05392812_05418070.mRNA


Basic Information

Item Value
RNA id CI01000299_05392812_05418070.mRNA
length 3552
RNA type mRNA
GC content 0.57
exon number 21
gene id CI01000299_05392812_05418070
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5392692 ~ 5418352 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAAATGGCTCAAGTCCTCATAATTATGGCAGCAGTCGTGCACGAGATGTCAAATGATGGTATTTATTTTGAAGTCCTGTCATTCTGATCTTGATTGACGTGTGACAGGTTTGACGTCATGGCGGAGCGGGTGTTGGTCGTGGGCGGTGGCGGACGCGAGCACGCGCTGGCGTGGAAGTTGGCGCAGTCTCCTCACGTTCAGCAGGTCCTCGTGGCTCCTGGAAACGCCGGCACTGCCAACAGCGGGAAGATCTGCAACTCAGAGGTGTCTGTGAACAATCACACGATTTTAGCTCAGTACTGTAAAGATCATAACGTGGGACTCGTGGTTGTTGGTCCAGAAGTTCCTCTGGCTGCTGGCATAGTGGACGATCTGACGGCCGCTGGCGTCCCGTGTTTCGGCCCGTCGGCGAAGGCAGCGCAGCTGGAAGCCAGTAAGAGTTTCTCCAAGTCCTTCATGGACCGTCACAACATTCCCACCGCCCGCTGGAGCTCCTTCACCGACCCGCAGGACGCCTGCCAATACATTCGCAGTGCGGAGTTTCCTGCTCTGGTGGTGAAAGCCAGCGGTCTGGCTGCTGGGAAGGGTGTTGTCGTCGCTCGTGATAAAGCTGAGGCGTGCCAGGCAGTTCTGGACATCATGAAGTGTTTGTGTTTCAGTGACGGCGTCACAGTGTCGCCGATGCCACCGGCACAAGATCACAAGCGTCTGATGGATGGGGACCAGGGACCGAACACAGGCGGCATGGGCGCGTACTGCCCTACACCACAGGTGTCAGAGGAAGAGCTTCAGGAGATCAAGAGATCTGTTCTGCAGAAAACCGTGGACGGCATGAGAGACGAGGGAACGCCGTATGTGGGTGTTTTATACGCGGGACTGATGTTGACTAAACAGGGGCCGAAGGTCCTCGAGTTCAACTGCCGCTTCGGTGACCCCGAGTGTCAGGTCCTGATGCCGTTGCTGAAGTCTGATTTATATGAGGTGTTGAAGAACACACTCCAGTCGGACCTGAGCTCGAATCCAGTGCAGTGGCTAGAGGACAGCGCGGCCGTCACTGTGGTCATGGCCAGCGGAGGTTATCCCGCCTCGTATAAGAAGGGTTTGGACATCACCGGTCTGTCTCAGGTGTCAGAGATGGGCATTCAGGTGTTCCATGCGGGCACTGCGCTTAAGGATGGGGGCGGGGTTATTACGAGTGGTGGGCGTGTCTTGACGGTCACCGCGGTCCGGCCCACCCTTGAGAGCGCCTTACGCAGCGCCAACGAAGGGGTAGCAGCGATCAGCTTCACTGATGCCGTGTACCGCCGTGACATCGGCCACCGCGCCATCACGTACCTCACCCGCACCAGAGGACTGACGTATAAAGACAGCGGCGTGGACATCGCTGCAGGAAACAGACTCGTGGACTTGATCAAGCCTCTGGCCAAGGCGACATCTCGACCAGGTGCGTCCTCAACCGTGTCTCCGATCGCTCAGGAAGTTTCTGGGTTAAACTTCACAGTTGAAACTCCTTTAATAATATCAATCAACATGCAGTCGTTACCCCACAATCATTTCAGCTTGTCACTCAAACTACAAACATACAAAATCAGATATAAACTTGTTTATGGGTGTAACGCGGAGCTCGGTGGGTTTGCGGGGCTTTTTGACTTGAAAGCTGCAGGATTCGTCGACCCAATCCTGGTGTCGGGAACAGACGGAGTGGGAACCAAACTGAAGATCGCTCAAGCGTGTGGCATGCACAGCACTCTGGGACAGGATCTGGTGGCCATGTGTGTGAATGATGTTCTGGCTCAGGGAGCAGAGCCTCTGTTCTTCCTCGACTACTTCTCCTGCGGACGTCTGGATGTGGGAGTGGCGTCTTCTGTCATCGGTGGCATCGCAGACGCTTGTCAGATGGCCGGATGTGCTCTGTTAGGAGGAGAGACGGCGGAGATGCCGGGTGTTTACGGCCCCGGTGAGTACGATCTAGCGGGCTTCTGCGTCGGGGCCGTGGAGCGAGGGGCCGTCCTGCCCAGACTCAAGGACATCACAGAGGGAGATCTGCTCATCGGTGTGGCCTCCTCTGGGATTCACAGCAACGGCTTCAGCCTCGTGCGCAAGGTCCTGGAGCGGACCGGCCTCCAGTACGGCTCGCCTGCTCCGTTCGGACAGCCCGGACAGAGTCTTGGTGACGTGCTGCTCACGCCCACGAAGATCTACAGCCGCCTGCTTCAGCCAATCCTGCGCAGCGGAGCCGTGAAGGCCTACGCCCACATCACCGGCGGCGGGCTTTTGGAGAATATTCCTCGCGTTCTCCCGCCAGAACTGGCAGTGGACCTGGACGCGTCCCGCTGGAGGATCCCGCCCGTGTTCTCGTGGCTGCAGCGGGAGGGTGGCCTGTCGGAGGAGGAGATGAGCCGCACCTTTAACTGCGGTCTGGGCGCCGTGCTGGTGGTCAGCAAACAGGACGCTCAGAGGGTCGTACGGCTGCTGCGGGCCCAGGAGGAGGCGTGGATCGTGGGATCGCTCGCTCACAAACACCCCGGAGCGGAGGCTGTGGTCATCAGAAACCTGGAGCAGAGTTTAAAAGAGAGTCCCGGACGCTCCCCGGACACCAGCGCCCTCGAGAACGGAGCTCTTCACGGGGAACACGCCACACGCAAGAGGACCAAAGTGGCCGTTCTGATCTCTGGAAGCGGAACAAACCTGCAGGCCCTGATGGAGCAGGCCAAGAAACCCTCGAGTTCGGCGGAGATCGTGGTGGTCATCTCCAACAGACCGGGCGTCATGGGGCTGAAGAGAGCGTCTATGGCGGGCATTCAGACGCGGGTCGTGGATCATAAGCTGTACGGCAGCAGAGCCGAGTTTGACGGCACCATAGACCGAGTCCTGGAGGAGTTCAGGGTGGAGCTGGTTTGTCTGGCGGGTTTCATGCGAATCCTCACGGGACCCTTCGTCAGGAAGTGGAGCGGGAAGATGCTGAACATCCACCCGTCGCTGCTGCCGGCCTTTAAAGGAGTGAACGCACAGAAACAGGCTCTTCAGGCCGCCGTCCGCATCACCGGCTGCACCGTACACTTCGTGGCCGAGGAAGTAGACGCAGGAGCGATCGTCGTACAGGAGGCGGTTCCCATCCTGGTGACTGACACCGAAGACAGCCTATCGGAGCGCATCCGGGAGGCGGAGCATCGCGCCTTCCCCGCGGCATTAGAGCTGGTGGCCAGCGGCGCCGTGAAGCTGAGAGACGACGGACGGGTCATGTGGAGCCAGAGCGTTCAGGGATAGATCCGAACGGACCGGTGGCGTCTATGACACTAATGAACGCATGTTTCAGTCCTTCATTTAGACATTAATTCCATTGACATTCCACATCCAATCATTCCAGATTGTTCATAAAAACTCATTCCTTCTGCTTCTGCTGAGGTTCATCTTTGTAGTTCAAATTCTGAACAGTATTAGTCAGATTCACTGTTGAGGAATATTATTTACTCGTGCCTGAGAATTATGTCATGTACAAGATGAACTTTATTCTCTGCATGTAACAGAACGAGATATTTGCTCTTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466521 lncRNA upstream 13677 5376267 ~ 5379015 (+) True G405992
TU466701 lncRNA upstream 135480 5256739 ~ 5257212 (+) True G406134
TU466657 lncRNA upstream 436336 4956150 ~ 4956356 (+) True G406101
TU466528 lncRNA upstream 456244 4934315 ~ 4936448 (+) True G405999
TU466523 lncRNA upstream 458757 4818488 ~ 4933935 (+) True G405994
TU466513 lncRNA downstream 6237 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA downstream 6237 5424589 ~ 5428247 (+) True G405987
TU466892 lncRNA downstream 134290 5552642 ~ 5554868 (+) True G406315
TU466941 lncRNA downstream 216396 5634748 ~ 5639866 (+) True G406354
TU466760 lncRNA downstream 338425 5756777 ~ 5827969 (+) True G406189
CI01000299_05331367_05364944.mRNA mRNA upstream 27715 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05254419_05314859.mRNA mRNA upstream 76449 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05128395_05192154.mRNA mRNA upstream 199698 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_04906697_04907091.mRNA mRNA upstream 482619 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_04892566_04900169.mRNA mRNA upstream 492156 4890391 ~ 4900536 (+) True CI01000299_04892566_04900169
CI01000299_05619817_05725510.mRNA mRNA downstream 201352 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05732790_05737401.mRNA mRNA downstream 314438 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05778912_05790662.mRNA mRNA downstream 360211 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05799020_05801977.mRNA mRNA downstream 380590 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05816534_05817445.mRNA mRNA downstream 398182 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
TU466818 other upstream 19113 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 464848 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 688067 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 886775 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1072551 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 819486 6237838 ~ 6300508 (+) True G406161

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001484 True 3048 mRNA 0.55 28 NC_007112.7 973467 ~ 999556 (-)