RNA id: CI01000299_05457285_05462908.mRNA


Basic Information

Item Value
RNA id CI01000299_05457285_05462908.mRNA
length 1100
RNA type mRNA
GC content 0.48
exon number 3
gene id CI01000299_05457285_05462908
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5456864 ~ 5463491 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCATAATGAGATGCTCTTGTTTACTCTTCGTGTTTGGTTGAGGTCAGGGATGATGCACACAGAGAGGATTCGTGAAAACACGATTGAAGAGAGACCTAAATATAGACTTCAGGGTCACTACAGAGAGAAGATGATGATGATGATGCAATTTGCAGCTATTGAAAAGGGCGAACGTGTTCCCAGAATGATCGTGCGGATCTTGTTTTGTTCCTGAGGTAACCGATAATGCTCGTGTGATGATGATGATGATGAGTCGTGACGGTGGAGGCGGGCAGCGTCGCGCGGCCCTTCAGTCGCATCCAGACTCCCTGAGCGGCTGGACGACGTTCCTGGGGGAGGGGATCGAGTGAAGAAAAGAAAATAGCGCAAGGAAGAAGTTAAAGACAAAGAGGAAGGAGTCAAGAGGAGAAGTTCTGAGAGACTCGTGGAACACGTGCAGCGTTATGGACTTTATTTTAAGCGTCTAAAACTTGACAGTCAGACCAACACAGACGTATCATCGGTTCGATGAATTGACCGTCAACTAACATGTGAAAGTTGGTTAGACGCGTTTGTTTTTCCATAAATCAACGGGAACATTATGGAAAATCCGAGGACGGCGAGTTCACAGAAGAGTTGGAAGTTCGTGCGGGACTCGCTGCTGCTCTGCTTATTCGCCGGACGTGGAGACGCTCAGTGTGACAGCTGTGTTGAGTACTGCTGCGATGGAGTTCCTCCTTTCTGCTGTTCTTATTACGCGTATGTGGGAGACGCCCTCCACCTCCATACAGCTATGATTGTGAGATGTATCCTCCTGATCTGCGGCCGCCTCCGTACACACCGACTCCACCCAGAGCGGCAAACTACTCTCCGCCTCCACCCTATCCAGGCGACAGCAGGAAATGAGCCTGCGTTCGTGCCCTTATTCTGCTGCTGCTGATGATGAAGATAGTTGCACTCGGAATTGCACAAAATCTCTGCACAACACAAGACCAGCGCTCTGGAAACAAAGCAGAGGATTTCGACCGCAGATGCTTCTCATGTGGGGATTTGAATATTTTTTTTTTATTAATGCAATTGACATTTATGGTCTCACAAATCTAATTAACTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468426 lncRNA downstream 38736 5413334 ~ 5418371 (-) True G407669
TU468329 lncRNA downstream 274745 5085394 ~ 5182362 (-) False G407591
TU468330 lncRNA downstream 345873 5085394 ~ 5111234 (-) True G407591
TU468298 lncRNA downstream 460198 4957987 ~ 4996909 (-) True G407565
TU468297 lncRNA downstream 500742 4956098 ~ 4956365 (-) True G407564
TU468500 lncRNA upstream 89137 5552628 ~ 5554845 (-) True G407734
TU468538 lncRNA upstream 171349 5634840 ~ 5639866 (-) True G407764
TU468628 lncRNA upstream 310758 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 358084 5821575 ~ 5821591 (-) True G407801
TU468639 lncRNA upstream 466148 5929639 ~ 5930546 (-) True G407858
CI01000299_05428160_05443433.mRNA mRNA downstream 13674 5427661 ~ 5443433 (-) False CI01000299_05428160_05443433
CI01000299_05419449_05423414.mRNA mRNA downstream 33693 5419403 ~ 5423414 (-) True CI01000299_05419449_05423414
CI01000299_05379545_05381902.mRNA mRNA downstream 74967 5379149 ~ 5382140 (-) True CI01000299_05379545_05381902
CI01000299_04913779_04927715.mRNA mRNA downstream 529392 4913373 ~ 4927715 (-) False CI01000299_04913779_04927715
CI01000299_04861862_04862244.mRNA mRNA downstream 594514 4861577 ~ 4862593 (-) True CI01000299_04861862_04862244
CI01000299_05466693_05471714.mRNA mRNA upstream 2151 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05478688_05502027.mRNA mRNA upstream 13991 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05512316_05521322.mRNA mRNA upstream 48560 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05602070_05604608.mRNA mRNA upstream 138492 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05739937_05770480.mRNA mRNA upstream 276317 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
TU468421 other downstream 999 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 528289 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 906386 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1292783 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3439057 2017687 ~ 2018050 (-) True G405053
TU468578 other upstream 355078 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 364345 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 1068510 6532144 ~ 6534655 (-) True G407899

Expression Profile