RNA id: CI01000299_05619817_05725510.mRNA



Basic Information


Item Value
RNA id CI01000299_05619817_05725510.mRNA
length 6611
RNA type mRNA
GC content 0.48
exon number 36
gene id CI01000299_05619817_05725510
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5619704 ~ 5727439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATATAACATGATGTCTCACATCTTACTGCTCAAATCATGGACTGCTGTTTGCATGCTTTCTGAGGGACTTTCCCAGATAACACATCCCATCATCCACTGTTCTGTTTTCACATGACCTGGATTGGGCCGTATGTATATGTGTTCTGCCCCTCCAGAGAACATGTGGACGCCGCGGACGCCGTCTGCATCACGCGTACGTCATTCTGGTGCAGCAGTCGTCAGGATCACTCAGGTGTCTTCAGGCTAGACTTTGCTTTAAAGGGACAAATATGTGCTCTGTGTCCATCACAGGTGGTGCGCACCTGTCCTGCTTCAAGACCACATTCCTTCCCTCCCGCAGCATCTGATGACGTTAGTCCAGCACGGCCACCCCTCGGAAAACTACCGGATGCTTTCCTGGATCGCTGGGATTTCTGTCTCCAGGCAACATGGACATACACAATCCTTACATTTCTGACATGCACACAACTACTCAAAATAAAGCAAGAAGCCAGCCGTGGCCATGCGCTACAGAGGCTGGCCGCACCATCACTAATGGCTTTTAAATGTGCTCCTTCTGGGCTCGCGGAGAGAAATACACGAGAGCGGCCCCTGATTTATGGCTATGCTTACCTTTCACCTCGACTGCAGCGCTGCTCCTCATCCTCTCCTGCGCTCGCGGCCCTGCGATGTGGCGAGATCCGCGCTACTGTGCCAGTGGAGATAAAGTACGTTACGCTTCTGATTTATGAAGACAAGCAGATCATATCTAATACATGCGTGTGTTTAGATCGCTGCGATGGGCTCCACTGTTGCGATTCTGCACGTCTTGTGTTGCGTCTAGACACGCGTGATGGAGAACACGTCACTTGTGAGCACGTCTCTCCTGTCAAGTGTCCAGAATGGGCTTTGAGGGATTTGGTGAAGGGCCCGTTTGTGCTCAAACGCTCAAGGGCTTTCAATCAACGACGTGCGGAAGAGCACGTCAGCGGCCTGATAAGCCATCTTGTGCCGACAGGAGAGCTTGAGCAGCAGGTGGACCGGTCGGGTTTCTTTTTCAGCAAGATAAGATCAAATCTTACCAAAGGTGCTGTAAATAATTGTATTCTACCAAGCTTGGATGGATTTACCACAAGTTACAGTAATTTTCACTTTGCCTCCACTAGGGGGCTCATAGTTCTTCCTCGCAGGCGCAAGCTGAGACACGCCAACAGCTGTTCAGTGTCCAGCAGATGCACAGCTGTACTGTTCTTGGAAGAAAAGGCTGCACGAGGGATGGGGACCACGCTTCTCTCAGCGGTGGGCTGCTCTCATCAGAACCAACCGCAGTACTGCAAAAAACGCACAAGCACACCTGACGTTGTTTGCCAGAACCCTAGGGCGCCGTTTGCTAAGAAGAATCAATGGAGATTACGGACATGGATCTTGAGGTCCCAGGCGCCCCCTTCGGACCGGTGGCTTTTATCACCTGCCAGAACTGGCTGGAAGGCCACAGGGCTTTGGGGACTTATCCTGTACAACCCCTCTGCCGTGTGCCAGTCCAAGGCTGTGAGGCTGGTGAAGGATGAATATGGAAGATTATGTCCTACTGCTTTTGGCAAAGAACTGCATCACAGTCAGGAACACATCTTATGCAAGACCACCTTTGCCTGTACCAGGCCAATGATCTCTTTTGATAAGTCAGACCAGGAAAATGTTTCTCATACTCTCTCTGAAAAGCTTTTTGTGGTTCAGAGATATCAAGGACAAAGGGTGACCTTCATCACATGGATCACATGCGATTGTCAGGGCATTATGAATAGTGTGGTAAAGAGCAGACATTGGGCCTGTCATCGGCTCCGATACAGTTGGAGAGATGCTCAAATTCCCATTTTCACCAAAATGATGCTGGTGCCAGAGCATCCCTCTCTCAGAACCGGTCCACATTCACACATAGACATGAAAGTCAAATGTTACGACATAAATTACTCACAAACATTGCCAATTTTCCGACCCAAGCCCTTTTCTTTGGTTGAAACATTGCAAATGGAGCCAAATCGGGAATTGCCTCCAGGACCAGCGTTCTGCCAGTGGAAAAGAGTCCTTGTCGCTCATGTCACCATCCAGCTACTTCGGATGATGTTTTGTATTATGGATAATGAGGCAGTACTGTTACTGTACGGATATTTCCACTGTGAAACTAGCATGCGACCACATGACAAACGACATGCATTTTACTTTTTCCCTCCTGAGACGTTTCTGGTGAAAGATCCCAGCCGATCACATGGATGTTGTTGTTCCTCCTCTGTTTCCTACATCACCTCCCTCGTCCTCCTGACGATCCCGGAGAGAGATGGCATGGCTTTACCAGGTTATCCCATTCCATCAGAAACGACTGCAGTGAATGAAGAGCTGAAATCTGCTGATTCCAGTTTTAAACTTCTAGGAAACTCACACCAGGGGTCAGAAAGATGTGCTTTCACCTTGCAGGTGACAACGATTGAGGCCTGTGTTTTGTTAAGTCCTGCCAAAACTGTGGACTGGTGGTCTGGTCTTAATTACATCGTTTTTTTTAAGAAGCCCTACATTTTAAGAGGCTTCCTGGCCTCTCCACGCTCTGTTACACCTCATAAACTGCCCCGTGATTCAGCACTCATGAGTTACCCGTCGTGGAGCCACAGCTCTGGCCTGGACAATCGAGATGTGGAGGAGAACCAGCAGTGGATTCGGCCTGCATTAACTGGAAAAGTCGTGTTTTTGTCCTGTCTTCTGTTGGAGAGTCCTGCACCCTGCACAAGTCTCAGTGATCTTCTGGCTCGGAGAGGCCTTGTGGACGGTGAGACTTCCGATTTCCATGAGCAACGCAGGACCCTCATGCGGCTCAACATCCGCCCCAGGAATGCAGATTGCAGGTGCTTTATTGTTGTGTTTCTTGAGCTGGTGAGCGAGGCGTCCCATTTCAAAGATAACACCAAAACACAATTAACCCCAGCGACACTCGAGACGCGTTTCCTGGTGCTCGCTTACCACGTTCTGACAGCGGGTATCAAAACACTGGAAGGGGTGCCAGACCCCCGTTTGACGTCAAAAGGGTTTTCCCCTGAGGCTGATGGGACTTTATTCCCCGCTCACCGCTCGCGTCAGAGGTGGGCTTCGACACAAGATCCTGTCCCTGCGTTAACTTCGCTTGACTGCGTCGTTTCTTACGGTAATCCTTCGCTCGGAGAGTCGTGCACATGTGTCAATCGAGTGAAGGCTTTTAACAGAGGGAAGCCAGCAGAGAGCAACACCTGTTCCAGTCGGAGCAGCGGCTCTGTAATCACTGCGGTTTCCAAACCTCATCCAGCTGTTCCTCCAGTGATAGTGTATGCATCAGGCAGACATTCGTATCTTGACATTGACGTTGTCCATGTTCACCCGTCCCTCTCCTCCATTCCCGCTCTAACGTCATTTCTGGGAAAGCGTACGTCAGGGCGAGATATTGACAAAGGGATGGCCTCTATTTTTGTCGCATTCCACAATCGGATGACTGAAGCCTTCAGTAACTCCAGAACCAAATGCAGCTCCTTACGAAACCCCGCCCACTCCCTTCATCCCCCGCCACTAACGAGCCCAGCAGACGCCGTACGAGCCGAATGCACAAGCCCTGAGTCCTGTACTGCAGCGGGAGAGTTGAGGAACAGGGATGTGAACGCGGGTTATTCTGGAGCTGGAGCCACAGGCTTTTCCTTCCTGTGGTTTAACGGCCCACTGACCGGTGCCTGGCTTTCATCTGCGCGGACGGAGCTGAAGGAGATTGTTTACAGCTACTGCATTACAGTCCTGCCAGTTAACCCACGGGATAACCATGAACACATCGTCTGCTTTTTATTTCCTGAAGGGCATCAAAACAAAGAGCTTTTGCCACGCGCTGACGTTTTCTGCAGTTACTCACAGTTACCGGCGTTTGTCAAAGAGTACTTCCACCTTTTCCAGGGCCGCAACATGCAGGCGTTTTTCAGCCCCGTCGGTGTCGACCCTCTCGGCCAGGTTCACGGGAGCGTCCGGCGACTCTCGCTGCTGTGGCCCAGTTTAATCCTCAAAGAAGCCCTGTCTGGAAAAGCCTCCTCCAGAAGCCCATGTGCTCCCAAAACTAGCTCCTTCCAATTTAACCAAAGGAGTAATGGCCGTCAAGTGTCTTATTTTGGAAACTCTCGTGAGCTCATGCTTGCACTTGCGTGGACCTTAAATTCAATACCCTCTATGACAGCAGAACAAAAGAGTCTCTTTTACGAGACGTCTCTGAGACGCAGTGTGGCGGCAGTCGCGTGCTGCTTCAGCATCCTGCTCCTCGTTCACTGGAGGCACATTTGGCTCACACATGTTCTCCCTGAGGGCTCCACTGGACCTGGACATTATCTGCATGGTATTTTGAAGAAAAGATTCATTAGATCTGTGAAAGAGAACATGCTGTCTGAGGAAGAGGACAGTCCGTCCAACCTGCTTCCCCAACAGCCGCCACTGTTGATAAGACACGCCCATTGGCTGCTCCTGATCGGCTGTAAAGCATGCTTTAGCTGGGCTTGTGTGAGGCTCAGAGGCTGTAGCCGTAAAGTTTCAGTGCCGCAGGCGGAGATTTTCTCAATCCCGCTAGATTTCCTCTCGTTTCCATTGACTGACCTCGCCGATGTCAGAGATCCCGCGCTTGACCCGTGTAATCCTGACCTCTACACCATCACTTAAACCCTTCCAGACCTCCTGCACTGGGCTGTTTCTGTTGCTTTATTAGATATGTGACAATACCAGCTAACAGGAAATGCTTTCATAAGGTTCTCTCAAAGTTGTGAACAAACCTTCTTCCAGTAATGTTAATAGAACATTTGTTCAAAGTTATCTGGTCTTTTTTAATGTTCGCAAAAACATTAGGACAAAAACATCATTTATATATCATTTATGAAGCCACTCCGAGTACCCTAGCAACCGCATAACAAGATCCTAGCAGCCACCCAGAGTACCATAGCAACAGCATAGCAACCACACAGAGTACCGCATAGCAACACCCTAGCAACCACCAAGAATACCCTAGAGACCGCATAGCAACACCCTAGCAACCACCCAGAGTACCATAGCAACAGCACAGCAACCACAAAGAGTACCACATAGTAACACCCTAGCAATCATCAAGAATACCCTAGAAACCACATAGCAACACCCTAGCAACCACCCAGAGTACCATAGCAACACCGTAGCAATCAACCCAACTACCTGCATAGCAACACCCGAGCAACCACCATAAGTACCGCATAGCAACACCCGAGCAACCACACAGAGTACCATAGCAACACCCTAGAAACCACACAGATTACTGCATAGCAACACCCTAGCACCCAGAATACCCTAGAAATTGCATAGCAACACCCTTGCAACCACCCAGATTACCATAGCAACAGCATAGCAACACCCTAGCAATCAACCCGAGTACCTGCATAGCAACACCCTAGAAACCACACAGAATACCTGCATAACAACACCCTAGAAACCAACCAGAATACCCTAGAAACCACATAGCAACACCCTAGCAACCACCCAGAGTACCATAGCAACAGCATAGCAACACCCTAGCAATCAACCTGAGTACGCGTTTAGCAACACCCTAGAAATCGCGGAGTACCCGCATAGCAACACCCTAGCAACGTAAAGCCTCAAACGTACCCTCAAACGTAAAGCCTTCAAACTTTAAACTTCTTAAACACTTTCTTTTTCTATCTCTAAACAATTTCACACTTCAGGCTTTTTCAATTACTTCAAACTGTCAGGCTAGGCTTTCTCAAGCCAACATCGAAATTTCATAGAACCTTTTTTCTGAAACATTTTAGTTGGACGCTAGTCTAACATTTTTTAAACGTTACTACTTGTTTCAGAACATTCAAAAGTAACATTCCCATAATGTTCGCAAAATGGAATGTTCCCTTAACATTTACATAATCAAGACAACACATTTTGAAAACATTTTTTTTAAAAAACAGGTCGTTAAGAGAACATTCAGAAATAGCGTCTAATGAGAATGTTAGATAAACATTCTTAGAACATATAAGCTATTTGTTAGCTGGGATGCTGGTATAAGATGGTGAGATTGTGGTTTTCCATCATGATAGTGTCCCAGAAAACATAGAATTACCAAAGTTTTTTAATGTTATATTTTTATACCATTAAAGTGCGAGAATAGACGGCGGTCGTGATATTTCCCACCTACCCTCCACCCTTACACGTACGCCATCATTAACCGAAAAAACAACCCGCTCTGCCATTTACTAGTCCTCTGGTGAAAGCAGGCCAAACTGTCTCTTTATAGGCTCAGTGTGTGTGTAAGACAGAGAAAGGCAGTAAAGTCAGAGTTTCAGCGTAACTTCTCCATCCGCGGTAGTATAACTTTAACACGCAGCAGCTGTGCGTCGCGCTCAACCTCCCTATAGACGGATAAATCCACTCACCTTTGATCTGACCTGCTCTTGCTTCACCTCCACGAGTCTCTCGCCTTCATTTAATAACTCTTAATTAGTGGTGTTTACTAAGCCAAGCATCGCTATTACTATTGCTCATATTAGGGTTTGAGATTTAAATAACCTAACCTTATTAAATTTCAACATGTAGGTTTTCCTGCACTCGGGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466892 lncRNA upstream 64836 5552642 ~ 5554868 (+) True G406315
TU466513 lncRNA upstream 190059 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA upstream 191457 5424589 ~ 5428247 (+) True G405987
TU466521 lncRNA upstream 240689 5376267 ~ 5379015 (+) True G405992
TU466701 lncRNA upstream 362492 5256739 ~ 5257212 (+) True G406134
TU466760 lncRNA downstream 29338 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA downstream 31785 5759224 ~ 5762316 (+) True G406164
TU466781 lncRNA downstream 102645 5830084 ~ 5831741 (+) True G406210
TU467011 lncRNA downstream 172218 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 200743 5928182 ~ 5929929 (+) True G406168
CI01000299_05392812_05418070.mRNA mRNA upstream 201352 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05331367_05364944.mRNA mRNA upstream 254727 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05254419_05314859.mRNA mRNA upstream 303461 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05128395_05192154.mRNA mRNA upstream 426710 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_04906697_04907091.mRNA mRNA upstream 709631 4906697 ~ 4910073 (+) False CI01000299_04906697_04907091
CI01000299_05732790_05737401.mRNA mRNA downstream 5351 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05778912_05790662.mRNA mRNA downstream 51124 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05799020_05801977.mRNA mRNA downstream 71503 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05816534_05817445.mRNA mRNA downstream 89095 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05836707_05843149.mRNA mRNA downstream 108862 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
TU466818 other upstream 246125 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 691860 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 915079 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1113787 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1299563 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 510399 6237838 ~ 6300508 (+) True G406161

Expression Profile