RNA id: CI01000299_05732790_05737401.mRNA



Basic Information


Item Value
RNA id CI01000299_05732790_05737401.mRNA
length 1371
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000299_05732790_05737401
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5732790 ~ 5737802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AATATATCACGAGGTCAGTGAACACGACTCCATGTTAAAGAACTACGACTCCCATAATGCACATGTGACCGCACCCGGAAGTGCAATACATCGAGTCCACGCGCTGTTGTGTTTGAAAATCATGCGTGTGGACCAGACAAGAGTACGCTCTGGGCTTTTAACGTTCACACCATCGAGCGCTCCGACCTGCCAAAGCTCAGAAAATACAACCATAAAACTCCAAATCAAGCAGTTTGCGTGTGAAACGACACTTAAAACCAGATTGAGCCCGGTTCGTGCTGAGGCCGACGCTGCTCTCATGTACCCGACGCCCCTGTACGCTCACGCCGGCCGCGGCTCTTTCTCAGACGTGTACGAGCCTGCTGAAGATTCGTTCCTCCTGATTGATGCTCTGGAGAAAGACGCTGATCGGCTGAAGGGAAGCAGGCCGTCCGTGTGTCTGGAGGTGGGCAGCGGCTCCGGTGTGGTATCGGCCTTCCTTGCGTCTGTGGTCGGGTCTGAAGCGTTATATCTCTGCACTGATGTGAATCCAGTGGCTGCGCAGTGCACACTGCAGACGTCTCACTGCAACCACCTGCAGCTGCAGCCGGTCGTCACTGACCTGAAGTTCTGTCGTGTCTCGCAGGTCGAGTGTCTTTTGCCGAGGCTGAATGGAAAAGTGGACGTGCTTGTTTTCAATCCGCCGTATGTCGTCACACCGTCAGAGGAGGTGGGCAGCCGCGGGATCGAGGCGTCCTGGGCCGGTGGGATACGTGGCCGCGAGGTGATGGATCGATTCTTTCCCATGATTCCACAGCTGCTGTCAGATCATGGGCTGTTTTACCTGGTGGTCGTGTCAGATAATGATCCAGATGAGATCGTGTCCCTGTTGGGGAAATCTGGGCTGAATGGACACGCGTGTCTGTCCCGTCAGGCTGGACGAGAGAGGCTTTCTATACTGCGCTTCAGTAAAAGTGACGATACGTCCTGAGACCGTCAGCACATGAAGACTGTAAAACACACCAGACGTCTCATCCCAGGGGTTTCTGGGTATTATTATAAAAATCAAGCTGATGTTTTGATGTTCGTCCCGCTGCTGAACCCTCAGTAATTGAGGCGTTTGTGTTTCCATAAAGTCTGCCGAAGCTCAACAACTGGGTCACAAGAAACTGGTTAGTCATTCCTAACGGATTGATGGTGATTGTTGACGCTCAACGGACTGCGCCGTGTTTCACTGTTTGTTGAGCGTGTCAGACTCCCGCTGCTTCTGTTTCATTCCATCAGTTACACTCAGAATATGTTCACTAGAGAGTGTTAAACGCTCTTACTGACCCGCACTGACACTCGGAGCACATGGTTTCACCCAGAATGCCACTGGAACCAATCAGGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466941 lncRNA upstream 92924 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 177922 5552642 ~ 5554868 (+) True G406315
TU466513 lncRNA upstream 303145 5424589 ~ 5429645 (+) False G405987
TU466514 lncRNA upstream 304543 5424589 ~ 5428247 (+) True G405987
TU466521 lncRNA upstream 353775 5376267 ~ 5379015 (+) True G405992
TU466760 lncRNA downstream 18975 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA downstream 21422 5759224 ~ 5762316 (+) True G406164
TU466781 lncRNA downstream 92282 5830084 ~ 5831741 (+) True G406210
TU467011 lncRNA downstream 161855 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 190380 5928182 ~ 5929929 (+) True G406168
CI01000299_05619817_05725510.mRNA mRNA upstream 5351 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05392812_05418070.mRNA mRNA upstream 314438 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05331367_05364944.mRNA mRNA upstream 367813 5331201 ~ 5364977 (+) True CI01000299_05331367_05364944
CI01000299_05254419_05314859.mRNA mRNA upstream 416547 5254419 ~ 5316243 (+) True CI01000299_05254419_05314859
CI01000299_05128395_05192154.mRNA mRNA upstream 539796 5128348 ~ 5192994 (+) True CI01000299_05128395_05192154
CI01000299_05778912_05790662.mRNA mRNA downstream 40761 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05799020_05801977.mRNA mRNA downstream 61140 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05816534_05817445.mRNA mRNA downstream 78732 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05836707_05843149.mRNA mRNA downstream 98499 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05844429_05845510.mRNA mRNA downstream 106359 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
TU466818 other upstream 359211 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 804946 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1028165 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1226873 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1412649 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 500036 6237838 ~ 6300508 (+) True G406161

Expression Profile