RNA id: CI01000299_05739937_05770480.mRNA


Basic Information

Item Value
RNA id CI01000299_05739937_05770480.mRNA
length 2139
RNA type mRNA
GC content 0.53
exon number 15
gene id CI01000299_05739937_05770480
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5739808 ~ 5770807 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTTAAAGTTGTTTGACACTCAAGAGTGTATAATTGACCTGTTCTTCTAACAGTTATAATAATAAATACTTAATAATAAATTGCAAATTATAATAAAACATGACTGTAACTATTTTGGAGCTTGTTGAAAGCAGTCACCCAAAGCGGAACCCTAAACGCCTGTTCCTTCACCTCGCACGGAATGTTATTATCGCTGCAGCGCTCCAGCCGGAAACCGTACAAGCATGTCGCTGATTTCAGTCAGTTAGCAGGATTATTGAATACCTTTTCTCTATATTTTGTATTTATCAGTTTATATTGCGGAGGAAATCTCTGTGTGACCGCTCATGGCTGCTCGGACAGTCTGTCAGATGCTTCAGCGCCGTCTGGCGTCAAGCGCAGCGGCTGCACGTCTGTCGTCTGCAGAACTGCGCAGTCATCGCAGCGCCTTGTTCTCTAAAGAGCAAGAGCGTCAGAGATCTCTGTTTCCGCGCACAGAGAAGATCGAGGTGACCCTACGGGGGCCCGGCCTACAGGGGACCCTGCTGGTCATGAACCGAGGCGTGTCGACGCCACACAGCTGCACGCGCCATCTGACGGAGTGGCATGTTAAGAGTTCTGCTCTGGCTCTGGTTGACGGGCAGCCGTGGCACATGCACCAACCTTTGACCCGCTCCTGTGACCTCACCCTCCTCACCTTTAAAGATGAAGACCCTCAGATAGTCAATCAGGCGTACTGGCGCTCCTGTGCGGCTCTTCTGGGTCATGTGCTCGACGGAGCGTTTAAGGACGAGTTCAGCGTCGAGCTGCTGAAGATTCCAGAAGTACCAGTGACCGCCGGTGCATTCTGTTGTGATCTGGTTCTGGACTCTCGTTTAGACTCCTGGACGCCCACAGAGGAGAGCCTGCGCAGTTTCACCCGTGACGCGCTGCAGCTCGTCCATAAAGATCTGCCGTGGGAACCGCTGGACGTTTCGCCGTCTGTGGCGCTGGAGATCTTCTCTCACAGCAGGTGTAAACAGGAGGAAGTTGAAGAGAGAGCAGCTCAAAGTCAGAATAGGACGGTGTCGTTATACAGGTGTGGCGATCATGTGACGCTGAGCGGAGGCCCTCTAGTGTCCCGCACGGGTCTGTGCTCGCAGTATGAGGTCACGTCCATCCATACGGTGGGAGAGAGCGCATTGGGCGTCCGGCGCAGGGCTCAGGGTCTCTCGCTGCCAGTGAATCTGACCGTACGCGTCCCTGTCGTCCCCGTCACCGTCACCAGCCGCAGTCCCAAAGTGGAAGTGCATGAGCTCTCGGACGCCGAGCTCTCCTGTGAGTTCAAGACTGAGAAAGAAACCAGTCCTCGCATCGAGTGGAAGAAGAAAGACAAAGACGTGTCCTTCGTTTATTATGAAGGCAGCTTCTTAGGACCGTTTAAGGGGCGCGCGACTATCGAAGGGGCGACGGTGCATCTGCGCAGAGTGACTCAGGCGGATGCGGGCGAGTACCGCTGTGAGGTCAGCGCTCCGGCCGACTCCGTCAAGCTGGGAGAGACCAACGTCACGCTCAAAGTGCTGGTTCCTCCACAAACCCCGTCATGTGACATTCCCAGCTCCGCTCTGACGGGCTCTCAGGTGGAGCTGCGCTGTAGGGACCAGCACAGCATCCCGCCGGCCAGATACACCTGGTTCAAAGACAACCGCGCGCTGCCCATCCGTCAGCCCAACGCCACATACACGGTCAACGAGTTCACTGGTGTACTGACCTTCCAGACGGTGAGCAGGGCCGATACGGGTCAGTATCACTGTGAGGCCAAAAACGGGGTGGGACCCGCTAAGAGCTGCCGGGGGACACTCATGCAGATCGAGTTTAACATTGTGTTTTCCTGTTTCAGTCAGCATTCAGGATACAGTCACCCTCCAAAGGAACGCCTCCTGCTGGCCGTTTGTGGTGCAGCAGACCCTCAAACCAATGAACCAAATGAACCAGAGCGACTGAAACAGTTTAATCCGGTGCCTTTAAACAAGCTGATCGATGATGTTTGACACGCCGTGCCTTTCATTTCAACAGAATCATGTCTTTATCTGATGAGTGTGAGGATGTAAATCATGCAATGGGTGAATTGTTGTATATTTTATCAGTATTTGTTTATTCTTGTTTTGTTTTTTAATAAA

Function

GO:

id name namespace
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K17420 MRPL39; large subunit ribosomal protein L39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468538 lncRNA downstream 99942 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 184963 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 276636 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 321437 5413334 ~ 5418371 (-) True G407669
TU468329 lncRNA downstream 557446 5085394 ~ 5182362 (-) False G407591
TU468628 lncRNA upstream 3442 5774249 ~ 5775541 (-) True G407848
TU468580 lncRNA upstream 50768 5821575 ~ 5821591 (-) True G407801
TU468639 lncRNA upstream 158832 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 174568 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 192873 5963680 ~ 5969556 (-) True G407825
CI01000299_05602070_05604608.mRNA mRNA downstream 135193 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 218486 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 236540 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05466693_05471714.mRNA mRNA downstream 267821 5465642 ~ 5471987 (-) True CI01000299_05466693_05471714
CI01000299_05457285_05462908.mRNA mRNA downstream 276317 5457107 ~ 5463491 (-) False CI01000299_05457285_05462908
CI01000299_05802706_05815472.mRNA mRNA upstream 31697 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05818562_05822413.mRNA mRNA upstream 47599 5818406 ~ 5823867 (-) False CI01000299_05818562_05822413
CI01000299_05826769_05831144.mRNA mRNA upstream 55159 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
CI01000299_05831615_05835696.mRNA mRNA upstream 60584 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05849494_05852270.mRNA mRNA upstream 78595 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
TU468421 other downstream 283700 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 810990 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1189087 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1575484 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3721758 2017687 ~ 2018050 (-) True G405053
TU468578 other upstream 47762 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 57029 5835889 ~ 5835989 (-) True G407805
TU468694 other upstream 761194 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000054 False 1261 mRNA 0.57 10 NC_007112.7 580642 ~ 591331 (+)