RNA id: CI01000299_05816534_05817445.mRNA


Basic Information

Item Value
RNA id CI01000299_05816534_05817445.mRNA
length 923
RNA type mRNA
GC content 0.56
exon number 1
gene id CI01000299_05816534_05817445
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5816534 ~ 5817456 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTGGAGGCAAGCCAAAATCCGATTCAATCCGATTTTCCGTACTCATTTTCCGAGGACGGTCACCTGCGGCACAGAGAAACCTCTGACCCCTACAGGTTTACCTTCAAACTACACGACGCCCGTGAAACCGAGCGGGAGCATCGCAGCCTGTGTCTCTACATCACCCAGCACGTGTACGGCCTCTTAGAAAGGAAGTTTCAGCTTATCAGGGAGAATCTGGAGGACAGCAGTTTTGTATTCATGAGTCCAGGAGCACTGGAGCATCCTGGGAGTCTTTTGGTTCTGATCCAGGATTGGGGAACGGTTCGGAGTGGCGTGTGGAGCTGGAAGCTCGCGGCCCACGACGGTCTGGAGCGAGGCAGTCAGATCCCGTACCTGCGCTGGGCTTTGCTGGAATCATGTGCCGTTCTTCTGACGAACCCCAACGAGGGTGTGCGAACTCAAGAACATCACGTCCGGTTGGTTTGGGAACGCCTGGTTTCCCAGAGTTCTGCAGAGCACGTCTTTGTGGTCGCACATGGATACGGAGGCCTGGCTTTTGTGGATCTGCTGTGCCATCGGCTGGAGGAGGTTCAGCGCCGTGTGAAGGCCGTGGCTTTCCTGGATTCGTCCCACAGCCTTTGGCATCAACCGTTGGGAAATGCCGGACGCGACTGGCTGAAATCCCACTCCAGAACATGGATTCTCAGCACGAAGCCTCTGAATCGCTCTGTGGGCTCACTGAAGGCCGGTTGCACGCAGATGTCCGCAGGTACTCAATGCCACGACTCTGCGCCCGCCGTCTGCATGGAGTCCGTGTTCCGCTTCTTCGCCAAGATTATCAAACCTAAAGCCGCACCGACTCCCTTCGAGATCATCACCAGGAGCAAGAGCCGTGCGAACGAGCAAAATAACAACGCTGATCACTGACCAAATCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466735 lncRNA upstream 54218 5759224 ~ 5762316 (+) True G406164
TU466941 lncRNA upstream 176668 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 261666 5552642 ~ 5554868 (+) True G406315
TU466513 lncRNA upstream 386889 5424589 ~ 5429645 (+) False G405987
TU466781 lncRNA downstream 12628 5830084 ~ 5831741 (+) True G406210
TU467011 lncRNA downstream 82201 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 110726 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 131242 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 195952 6013408 ~ 6015647 (+) True G406213
CI01000299_05799020_05801977.mRNA mRNA upstream 14420 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05778912_05790662.mRNA mRNA upstream 25779 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05732790_05737401.mRNA mRNA upstream 78732 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05619817_05725510.mRNA mRNA upstream 89095 5619704 ~ 5727439 (+) True CI01000299_05619817_05725510
CI01000299_05392812_05418070.mRNA mRNA upstream 398182 5392692 ~ 5418352 (+) True CI01000299_05392812_05418070
CI01000299_05836707_05843149.mRNA mRNA downstream 18845 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05844429_05845510.mRNA mRNA downstream 26705 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05864998_05873333.mRNA mRNA downstream 46178 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05903841_05913302.mRNA mRNA downstream 84008 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05925030_05926229.mRNA mRNA downstream 107214 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
TU466818 other upstream 442955 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 888690 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1111909 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1310617 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1496393 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 420382 6237838 ~ 6300508 (+) True G406161

Expression Profile