RNA id: CI01000299_05844429_05845510.mRNA


Basic Information

Item Value
RNA id CI01000299_05844429_05845510.mRNA
length 1251
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000299_05844429_05845510
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5844161 ~ 5845665 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATAAAGACCAGGATGCGAAACTGAGACACGACATCATCTCCTTCGCTCTTATCCGCGCGATGCGCGTGCATGTACACAACCGCGCGAACCTCAAGGAAGCTAACAGACTGAAGGAGTCTTTCGATTGGCTGAGGAGTTTCCCCCCCAAGTTATCTACAAATATTGTGTTTAAGATAATGAAACAATATTAAACACGCGACACCGTCGTGTTTCAGTAAATCAACCTGAATTGCATTCGACGGATTTACCTCAGACCGTTGAAGAAAATGATTCGCGCGGTTTTGTGCTGTTTATGTTGTTTTCTTCCGGATGGAGTGTTTGGCGTTGAGACGGATGAGATAGAAGTGCCAGTGATGGCGGGAGATTCCTTCACTCTCCGCACCGGTCTGACTGAGATTCAGAGCGACGGTGAGATCGAGTGGCGGTTTGGATCGAGCAGAACTCGTATAACCCGAATAACGGCGGGAAACGTTACTAGATATGAAGACGAGAAATTTAGAGGCAGATTGAAGCTCGAAAGACAAACTGGAGATCTCACCATCACAAACGTCAGTAGCGAACACAATGGAGTTTATCAGCTGAGCATCATTATCAAGAATAAGAAAACAATCAATCGATTCGCTGTTACCGTTTATGCTACTTTGCCCACTCCTGTGATCTTCAGTGACCCTTCACAATGTTCTGAAAGATCAAGGATCGTCCTGTGTTCAGTGTTGAATGTGAGTCACGTGACTCTCTCCTGGTACAAAGAAAACGGTTTATTGATCAACATCAGCGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAGCATCAGGATAAAAACACCTACAGATGTGTGATCAACAATCCCATCAGCAACCAGACCAAACATCTGGACATCAGTGGACTCTGTCAGACACCTTCAGACTGCGACCTTTGTTTTGACACCACTGAAGCTGTGATCCGATTGGTCGTCAGTGCTCTGATGGGCGTGGCTGCAGTAGCTGCTGCTGTTCTTCTGATTAATGACATCAGAAGAGCTGGAAGAACATATAAAATCAAACAGCGATACAGCGATGTACCTGATACTGTAAAGCAATAATAAACAGTACCTTTTTAGTTTTTTTCCCTCTTTGTTTTTAACCAAATTATTTTTCACTCTTTTCTTCTCAAAAATGGGAAGAAACTTGTTATATTCTGATGCCTTTTAGGTTAGAGTTAAGTGACATATTTGGAACTAATCAGCTACTCATGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466781 lncRNA upstream 12420 5830084 ~ 5831741 (+) True G406210
TU466760 lncRNA upstream 16192 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA upstream 81845 5759224 ~ 5762316 (+) True G406164
TU466941 lncRNA upstream 204295 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 289293 5552642 ~ 5554868 (+) True G406315
TU467011 lncRNA downstream 53992 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 82517 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 103033 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 167743 6013408 ~ 6015647 (+) True G406213
TU466791 lncRNA downstream 179386 6025051 ~ 6025357 (+) True G406220
CI01000299_05836707_05843149.mRNA mRNA upstream 567 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05816534_05817445.mRNA mRNA upstream 26705 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05799020_05801977.mRNA mRNA upstream 42047 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05778912_05790662.mRNA mRNA upstream 53406 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05732790_05737401.mRNA mRNA upstream 106359 5732790 ~ 5737802 (+) True CI01000299_05732790_05737401
CI01000299_05864998_05873333.mRNA mRNA downstream 17969 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05903841_05913302.mRNA mRNA downstream 55799 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05925030_05926229.mRNA mRNA downstream 79005 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_05935373_05943285.mRNA mRNA downstream 89238 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05955084_05970603.mRNA mRNA downstream 108551 5954216 ~ 5971417 (+) True CI01000299_05955084_05970603
TU466818 other upstream 470582 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 916317 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1139536 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1338244 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1524020 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 392173 6237838 ~ 6300508 (+) True G406161

Expression Profile