RNA id: CI01000299_05856747_05860959.mRNA


Basic Information

Item Value
RNA id CI01000299_05856747_05860959.mRNA
length 2769
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000299_05856747_05860959
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5856716 ~ 5862986 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTCAATTTCCATGCCTTTAACGTAGAAATAATCATTAAAAGTTGAAATTGAAACCGAAAGTTAAACTTACCTTTTATTAAGATTAGGAAGAGCAGTAACATGTTCCGTATGTTTCTGTAGAGCTGTGAAGAAAATGAATGTAATAAAGCTTATGATTGGGATTTGTGTTCCGCTGAATCTCCTTAGTGTTTGTCATCCCAGAGCCTCACCAATGCCCTGTCAAAATACCCACACTTGCGGTCTTGTCTATGTCCAGTAGACCACACAGAGGCGGCGTTAGGGGGAGGGGGTGCAGAATATGACAGGCATATGGGCCCAGGACGCTAGGGGGCCCCAAATCACGACTTTGGATTTTGTGTGTGTGCGTGTGTGTGTGTGTGATTTTCTTTTACATACGAACACGCTCACTAATAATATTGTAGTAAAATACAATTTAAATCTGTTAATTACAGAATGTAAGAAGTGAATGTGAGCACGCTCTCTCGTCACTTCAAAATACAGCGCATGACGTGTTAACAAAAAAGAACAGGATGGATGGAAAGAAGAGCCTGTCAGGAAGAAGCGAAAATGTAAAAAAAAAAATATATGGATGAAGACATTAAAAGGAAGTTTCCCTTACGAAATGGGCCCTTACAAATAAACAAAATATTGGAGATGACTGTTCGCGGATGTGTCGAAAGACCTTAAAGAAGTCTATAGAGGGTGTGCATCGACGTCACTTTCCCGCCGGAGTGGCAAAAGAACCTGCTGCATGACTGGATTTAAAGGAACACTCCACTTTTTTTGAAAATAGGCTCATTTTCCAACTCCCCTAGAGTTAAACAGTTGAGTTTTACAGTTTTCGAATCCATTCAGCCGATCTCCGGGTCTGGCAGTACCACTTTTAGCATAGCTTAGCATAGTTCATTGAATCTGATTAGACCGTTAGCATCTCCTTAAAAAATGACCAAAGAGTTTCAATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACTAAGACCGACGGAAAATGAGAAGTTGTGATTTTCTAGGCTGATATGGCTAGGAACTATACTCTCATTCCGGTGTAATAATCAAGGAACTTTGCTGCCATACCATGGGTGCAGCAGGCGCAATGATATTACTCAGGGCCTGTGACCCCCTGCTTGCACAGGGAGCGTGCCTTGTAACCATGGAGACATTTGTGAGAGACGCTGCGTAATATCATTGCGCCTGCTGCAGCCATGGTACGGCAGTACCGTGTTCCTTGATTATTACGCCGGAATGATAATATAGTTCCTAGTCATATCGGCCTAGAAAATCGCAACTTTTAATTTTCCGTCAGTCTTAGTACACGATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATTGAAACTCTTTGGTCATTTTTTAACGAGATGCTAACGGTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTACTGCCAGACCCGGAGATCGGCTGAATGGATTCGAAAACTGTAAAACTCAACTGTTTAACTCTAGGGGAGTTGGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAAAGTCAGAGCGATCATCATTTTCATGATCGATTGTCGCTGTCACGTTCGAGTACTCGTGCCCATGCACCTAGTTTTGAGTAGCAATTGGGCGGGTTTTGTTTTGAAAACCTGGCAACCCTGGGCACGATCCAGTTTTTCTTTATGAGTTTAATTTCTATGGTGTTTCCCAACCTGTGAGCATTGGCCCACAGCTACTCAGTAGCTACTTCACTATCACAACTACTCCTCCCTCAAAACATTTCTGTTTTAAGCTACAAGAAAACTTATTAAAGTCAACAAGTCATGACATCCCCTGATGTCGTTCTCAAACAATACTAGAAGATAGGAACGCCTACTAGCGACCCTGTTGGCATTTGGCCACATACGGTGACAAAGAACAGGATGTTTAGAGTGATATACTGCGTGATTAAAAGGGCTTGACAAACCTTCAAGGATTATGGTGAACACTTTTATTTTGTTCTTTGTGTGCCTGTGGCGTCTATTTGATGTGACCGATGCAGTGAAGACAGTATCAGTGATGGAGGGAGATTCTGTCACTTTAAATATTGAAGTACAGAAATATTTGTTGATACAGTGGAGGTTTGGAAACACAAGAATAGCTGAAGTCAGCAGACTCACGCAAACCAACTCGACATATGACGGTCCTGATGAGAGATTCAGAGACAGACTGAAGCTGGATCAGACCGGATCTCTGACCATCACAAACACCAGAACCACAGACTCTGGACTTTATACAGTCACAGTTATCAGCAAAGACACCAGTTACATGAGTTTCAATCTTACAGTCAATGAATCACTGCCACAAAGTACTTCATCACCAGAAAGATCATCAAGCACCAATTTTTTGTCGCCCAGCTGTGCGGTCAATAATTTAACCATAAACCAAACTGAGGATGCCAACGCTACTAAACTCCACCAGCCATGTTCAGACAATATCCACTGTTGTGGTTTCAATGAAACTGTGATCCGATTGGCTCTCTCTGCTCTGGTGGGCGTGGCTACGGTTGCTTTTCTGGTTTATGACATCAGATCTACAAGAAGTGAGCTGATCAGAACAAAAGAGTCCAGAAATCACCGTCAAGCTCACAGAGTAAAATCAGGCCGTCGGTATGAAATGAACAGAAGGTTTAGTTCCAGATATGTTTGATGAAGTTTGCTGGTATAAACCCAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 81175 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 216850 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 301871 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 393544 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 438345 5413334 ~ 5418371 (-) True G407669
TU468639 lncRNA upstream 66653 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 82389 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 100694 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 155556 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 162039 6025025 ~ 6025802 (-) True G407884
CI01000299_05849494_05852270.mRNA mRNA downstream 4210 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05831615_05835696.mRNA mRNA downstream 20908 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05826769_05831144.mRNA mRNA downstream 25404 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
CI01000299_05818562_05822413.mRNA mRNA downstream 32849 5818406 ~ 5823867 (-) False CI01000299_05818562_05822413
CI01000299_05802706_05815472.mRNA mRNA downstream 41244 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05896205_05898855.mRNA mRNA upstream 33057 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05919510_05924061.mRNA mRNA upstream 56142 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05927821_05933216.mRNA mRNA upstream 64328 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05946615_05949088.mRNA mRNA upstream 83347 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 111405 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
TU468584 other downstream 20727 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 400608 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 927898 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1305995 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1692392 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468694 other upstream 669015 6532144 ~ 6534655 (-) True G407899

Expression Profile