RNA id: CI01000299_05864998_05873333.mRNA



Basic Information


Item Value
RNA id CI01000299_05864998_05873333.mRNA
length 3076
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000299_05864998_05873333
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5863634 ~ 5873515 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTACAAATAGAGACATTTTTGTGAATACAAATACTTTCTTTTGTATTAGTGTATCATAATTTGTTCATGCAACATGAAAGATCTGTCATTGTGGAGCAGGTGACACACGTGCATTCATTGACTCGTTTCTGAGTCGATCCTATTTGATTTATTAGGGCCCGAGCACCGATGGTGTGAGGACCCTATTGGAATTGCTCGGTTTATTATTATTCCGCTTCTTCTTCTTCTTCTTCTTCTCCCAAATAAAATCGCATTTTTGAGAGCCTAAACATGCTCGAAAACTCATGAATCTTCGCACACGCATCAGAAGTGGTTTCAGTATTAGGCGTGGCAAAATGGCTCGATAGCGCCACCTACAAAATTTCAACGAAGTGCCCCTTGCACCACGTTTCACGTACAGGTATGAAATTCAGTAGACACATGTAACAGCCCAATCCCTACAGAGAAGCCTCCTGGTGCAAAGTCTGAAAACCAACAGGAAGTCAGATATTTTGAATTTTGTCTGCAAAATTTGTGCACCTTTTGCCATTTCCAGACGTTGTACTTTAACGAACTCCTCCCAGAGCTTTAATCAGATCAACATCATATTTGGTCAGTCTAAAGCTCTTTGCGACGTTAAATTGCGAAGATCTAGAGTTTTCGCTGAAGGGCGTGTCCGTGGCGGCCTGACAAATTTCGATGTTTCGCCATGAAAAAAGAAATTTATGTAACTCGGGTATACAAAGTTGGATCTGCCCCAAACTTAACATATTTGATAATAATCCTGGCCTGAACACATCTACATGGCAATATTCAGGTACGGTCATAGCGCCACCTGCTGGCAACAGAAAATGGCATGCTTTACACTGTAATTCACTCCCAGAAACACATTTCAATATGCCACAAAGTACTAGAAACACAAACATACTAGAAACACGAGAAATCGTGCAACACTTGGCTGAGTGCTAATGTATGCGATTAACGCCACGAAACAGGAAGTTGTTGTAACTCAGGCATGCAAAGTCCGATCTGCTCCAAACTTCATGTTTGATAATAGTCCTGGCCTGAAGTCATCTACATGGAAATATTCAGTAACGGTCAAAGCGCCACCTGTTGGCAGCAGGAAGTGTGAAACTTTGAACTGACTTTGCCATAATTCGCCTGTATTTACTCACTTACATGCATGTCGCCCACTGTTCACTGTTTTCCTAAGGCCAACAGGTGGCGGTGAGCCCGGGTGCGAGGGCCCTTTCATCGCTGCTTGCAGCTTTAATTTGGATTTTGAGACTTACTTTTCGTGGTTTTCAAGCATTTCACAACCCACACACAAACAACCACCAATGAAGAAGCCTGGCGCTAATTATTAATGTGTGCACAACTACCAAATGTGCATTGCTACATTTAAACTAATACTTTACAACTTGTGTGTGCAAAATCCAGGTGTGTCTGGTGAATCTGAGACGGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACTCTGACCTCACCAAAATAGTGAACAAAGATACGATACTGTGGATGTTTGGACCTAAAGACTCTCTCATAGCTCAAATAGGGAGAACGGCCGATTTGACCTCATCTTCAGTCACTGACGATGTGGCATTCAGAGGAAGACTACAAGTGAACCAAGAAACTGGATGTCTCACCATCAGAAACACCAGAATCAAACACTCGGGACAATATAAACTCACCGTCTCGAGAGAACAGACATGGATCAAGATATTCAATGTTACTGTACAAGTTGTGGATGATGAGACGGATGGAGTGAAGTCGGAGTCAGTATCAGTGACAGAGGGACAGTCCGTAACTCTACACGCCGATTCTGAAGCACACAAAGATGCTCTGATGTTGTGGAGGTTTGGAGATAAAGGCATCCTCCTGGCTAAAATTGATTTAGAAACAAATAATATGTCATTGAATGAAGCTGATGAGAGATTCAAAGACAGACTTGAGCTGGATAATCAGACTGGATCTCTGATCATCACGAACACCAGAACTGAACATGCTGGACTGTATGAAGTACAGATGAGAGGCAGTGAGAGCTCACAGCGATTCCTTCTTTCTGTCAACACTGTTACAGATCCAGGTCTTTCTCCGGGTGCTATAGCAGGGATATGTGTTGGTTTTTGTGTTGCTGTTCTGCTTCTGGTTGCAGTTGTGATTTACTATCGACGAACAATCTCCAAATTACAACAAATTGAGATGAAAATGTCAGCGATGGAGGGAGAATCTCCAACTCTACGCACTGATCTTACTGAACCACATGATGAAAACATACAGTGGTGGTATGAAGATGAAACCAATCTCATAGCTGAAGTAAGTGAAGAGAAGAGTAAGACACATGATGGTGCTGATGGGAGATTCAGAAGCAAACTGAGGCTTTATGATTCTGGAAATCTCACCATCAGTAACATAAGGACCATTCACTCCGGACTCTATATACTCAAGATCAGCGGCAACAGAAGAACCGAATACAAGAGAGTCATTCTGACTGTTGATGTAATGAAAGTGCCGGTGACGGCGGGAGGTTCCGTCCTTCTCCAGAATGATGCTGAAATTCAGACGGATTCTCTGTTGCTGTGGACGTTAGGAGCTGAAAACAGTCTCGTTGCTACAAATGCTACAAGCATAAATAAAACCGATGAGAGATTCACAGACCGAGTGGAGCTGGATGAGAATACTGGATCTCTAATGGTCAGGAACATCAGAGCTGAAGACTCTGGACATTATAAACTACAGATCATCAACAGGGAACAGACCACATTCAGGAGATTCAATGTGACGGTCACTGAATCCTCAGGAAACACTGTGAATGAATCGGTGACTGTAATGAGCCCGCTGTTGAAAGAAAAGAATGTGAATGGAGAGAACCATCAGACGACTTCCCTTTAATGAGATTAGACACGCCCACCACTGTCAATCACTGTGACATCATCAACACATTTCTGCTTTTATCAAAGTGAGAAATGAACCCTTGTCTGCTGAGCTGTGAACTTGTGAACTTGGTTTTATATGAAAAGGGAAACAAGTTGGTGAAATGCAGAATTCATTTTCTATGATCAAGTAGGTGGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466781 lncRNA upstream 31893 5830084 ~ 5831741 (+) True G406210
TU466760 lncRNA upstream 35665 5756777 ~ 5827969 (+) True G406189
TU466735 lncRNA upstream 101318 5759224 ~ 5762316 (+) True G406164
TU466941 lncRNA upstream 223768 5634748 ~ 5639866 (+) True G406354
TU466892 lncRNA upstream 308766 5552642 ~ 5554868 (+) True G406315
TU467011 lncRNA downstream 26142 5899657 ~ 5899988 (+) True G406417
TU466739 lncRNA downstream 54667 5928182 ~ 5929929 (+) True G406168
TU467021 lncRNA downstream 75183 5948698 ~ 5948928 (+) True G406427
TU466784 lncRNA downstream 139893 6013408 ~ 6015647 (+) True G406213
TU466791 lncRNA downstream 151536 6025051 ~ 6025357 (+) True G406220
CI01000299_05844429_05845510.mRNA mRNA upstream 17969 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05836707_05843149.mRNA mRNA upstream 20040 5836301 ~ 5843594 (+) True CI01000299_05836707_05843149
CI01000299_05816534_05817445.mRNA mRNA upstream 46178 5816534 ~ 5817456 (+) True CI01000299_05816534_05817445
CI01000299_05799020_05801977.mRNA mRNA upstream 61520 5798942 ~ 5802114 (+) True CI01000299_05799020_05801977
CI01000299_05778912_05790662.mRNA mRNA upstream 72879 5778563 ~ 5790755 (+) True CI01000299_05778912_05790662
CI01000299_05903841_05913302.mRNA mRNA downstream 27949 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05925030_05926229.mRNA mRNA downstream 51155 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_05935373_05943285.mRNA mRNA downstream 61388 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05955084_05970603.mRNA mRNA downstream 80701 5954216 ~ 5971417 (+) True CI01000299_05955084_05970603
CI01000299_05988564_06002758.mRNA mRNA downstream 114580 5988095 ~ 6003021 (+) True CI01000299_05988564_06002758
TU466818 other upstream 490055 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 935790 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1159009 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1357717 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1543493 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 364323 6237838 ~ 6300508 (+) True G406161

Expression Profile