RNA id: CI01000299_05919510_05924061.mRNA


Basic Information

Item Value
RNA id CI01000299_05919510_05924061.mRNA
length 2227
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000299_05919510_05924061
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5919128 ~ 5924628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAAAATGTCACATATATCACACAAAACACAAAAATTATTCCAAGATAGTTCGTTTGAAGTTAAATGAAGTGGAAAATCCGGCGATATAACAGAACTGTGACAACTAGCCCCGGTCTCCTCTACATCTATAATAACATTCACACATTTCACAAAAGTAAAATCAATATACCATCAGCTGTATTTCTGTATGTTCACTCAGAAGTCACTGACGAGCCCTCAAAAGGACACACGCTGCTGCTGTCATGTGGATGTCGGTGTGCAACAATAAAAGTTGACCGTGCGGATGTCCTATCGCTTATTAAATTAGATATCTTTAATAACTTGATATTTTAAAAGAAGCTTGAATGCCCTGATGTGAAGTCTATTCATGTTATTTAAAATAGTAAAATAAGTATTATCACTAATAGTAACACAACACATTTATCTTGCGATATGCAAAGAATGTAGGAACTATTGATGGCGTTTCTAGTCGGCTCATATTTAGTGGTGCATCATCACACACTAGTAAACATCCGCTGGAGTTCAAACGCGTTAATTTTGTTCATAATTGTAAGTTAAATCGTCATGAGCTATTTTCTTCCTAAACTGTCGTGTAAAAAAGACATCGATGACGCGATTAAAACGGTCGCTGAGAAGGTTTTAGTGCTGCGATTCGGCAGAGATGAAGATTCCGTGTGTCTGCAGCTGGACGAGATCCTGTCAAAGACGGCTCATGATCTGAGTAACATGGCGAGTGTTTATCTGGTGGATGTGGACACGGCGCCGGTTTATACCAGATACTTCGACATCAGCTTCATTCCCTCAACAGTGTTCTTCTTCAACGGGCAGCACATGAAGGTCGACTACGGATCTCCAGATCACACCAAGTTTGTGGGAAGCTTCAAAACCAAACAGGACTTCATGGATCTGATTGAAGTGATCTATCGCGGCGCCATGAGAGGAAAACTGATCGTCCGAAGCCCGATAGACCCGAGAAACATTCCCAAATATGATCTGCTTCTTTCAAATTTTGTTGGAATCTACAACAATATGAAGAACCTTTCAAAAATCTCCCTGTTTTTATTTATAGTCTGTGTGTTTGGAGCTGATGTGGAGATAGTGTCAGTGATGGAGGGAGATTCTCTCACTCTAAACACTGGTTTAAGAGGGCAGTTTCATATACTACGGTGGAAGTTTGGAAATTCAGACTCACTCATTACTAATGATGAGAGATTCAGAGACAGACTGAAGCTGAATGATCAGACTGGATCTCTGACCATCAACAACACGAGAATCACAGACTCTGGACTTTATCATCTAATGATGGATCATCACAACTATGGGCTCTTATTTAAGACATTCATTGTTACTGTCTATGGAGTGTTTGATGAAGATGGAGTGAAGACAGTGTCAGTGATGGAGGGAGATTCTCTCACTCTAGACACTCGTTTAAGAGAGAAATTTAATCTAATAAAGTGGAGGTTTGGAGATTCAGGCTCAATCATTGCTGAAATTGATAGTAATGAGATCTCATATCCCTTCAATGACACTGAGAGTTTCAGAGACAGACTGAAGCTGAATAATCAGACTGGATCTCTGACCATCAAGAACATGAGAATCACAGACTCTGGACTTTATGAACTAGAGATCGATCAGAACGCTTGGAACCCATTAACGATATTCAAAATTGTCATCTGTGGACCATTCGTTTCAGGTCCAGGTCTGCCTCCAGGTGCTGTAGCAGAAATAGTTGTTGTCGTTCTGCTGCCGGTGTTTGCTGTTGCTGCTGCAGTTTCTTCTGTTTTATACTATCGCTGTAAGATCTCTAAACGAGGAAGGCAAAACCGTGAGTATTACAGCTGATACAGCAAGAGAAAAATAATGAGCTTTATTGTGCTACAGCTGAAGTGGATCATGGTCAAAATCACTTCAGATTTCCTTCTCATTCTGATGTCTGAACAACAACTGAACCTCTTAAATACCAGATACAACATGCTGCTACAGCCATAAATATCTATGGGTACACATGCGTCACGTGACAAAACATACATCATCAAATACCTCTATTTTTACAGTCCACATCACAACACAAAAAAGTTTTCAAATTTATTCACTTTGGAGAGCAAGAGCATCTTCAAAAAGCTCAATTTTCACTGGTCAAAAACAGTCTCAAAGTTTATTTATAAAACACTTTTTAAAAAGAACAAGTGTTTATCAAAGTGCTGTACACACATAAAAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468580 lncRNA downstream 20657 5821575 ~ 5821591 (-) True G407801
TU468628 lncRNA downstream 143587 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 279262 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 364283 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 455956 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468639 lncRNA upstream 5011 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 20747 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 39052 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 93914 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 100397 6025025 ~ 6025802 (-) True G407884
CI01000299_05896205_05898855.mRNA mRNA downstream 20271 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05856747_05860959.mRNA mRNA downstream 56142 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_05849494_05852270.mRNA mRNA downstream 66622 5849402 ~ 5852506 (-) True CI01000299_05849494_05852270
CI01000299_05831615_05835696.mRNA mRNA downstream 83320 5831391 ~ 5835808 (-) False CI01000299_05831615_05835696
CI01000299_05826769_05831144.mRNA mRNA downstream 87816 5825966 ~ 5831312 (-) False CI01000299_05826769_05831144
CI01000299_05927821_05933216.mRNA mRNA upstream 2686 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05946615_05949088.mRNA mRNA upstream 21705 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 49763 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_06037407_06054548.mRNA mRNA upstream 111589 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 204445 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
TU468584 other downstream 83139 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 463020 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 990310 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1368407 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1754804 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468694 other upstream 607373 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000046 False 835 mRNA 0.42 4 NC_007112.7 514001 ~ 518076 (+)