RNA id: CI01000299_05955084_05970603.mRNA



Basic Information


Item Value
RNA id CI01000299_05955084_05970603.mRNA
length 3698
RNA type mRNA
GC content 0.37
exon number 8
gene id CI01000299_05955084_05970603
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5954216 ~ 5971417 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATAAAAAGATGATAACATCCTAATTCAAAGAAGTGCAAAAACCTTTACAGAAAGGCGTTAGGGGTGTGATGATACACTCACAAGATGAAACGATACATGATATTGGGTTCATGAAACACTATTTTAAAAAAATCTTCAATGACTGGAAAAATATTCGACTGAAAGTCACAAAATGCAAAACAATGGAGGTGAATTTTGAAATGTTTTAACTAGGGCTGTCACATTGCGATTATTTTGTAAATTATTATTTTGACGATTAAATCACGTGGTCAATCATTATTTTTTGTGGTAATAAATTAGACCTAATTGAACAATGGCCTTTAAATTAACTTTAAATACATACAGTATATAATAACAATGAGGCAATAATAATGATAAAGCTGAAAATAAGGTATCAAAAGTGAGTAATTTTATGGTTTTATTGCACAATACTGTTAATGGACAAAGGCCTGAACATGTTAGTTTTAACACAGTATCACGGTGATTAAAGTTATAATCACGTTATCTACACTATTAGTAATTAAAGGAAGTGTTTTATTTGCATGTTTATACAGTGAGTAGATAGAGCAACAGACTGTATAGAAAAACAAACAATGCACTGCTGTCCAAAAGAGGCAGAGTAAAAGCCTTTCTCCTCTATCAACAGCTTCATTTCCTTCATTTACTCAGTGAGCAAAGCTCTGTTAAATATTAAACATGTAAAATTAACTGAAATAACCTGAAGACAAATGGGTGGTGATCTGGATGGAGAATACTTTATTTATACTTATTTTTTATTACGTATTGAGTTCACCTCAATTGTATCAAGTTTATGAGCTGTCAGTCAAGACCAAACAGGACGTAGCTGTATGTTAAGAAATAACAGCATGAAACAGGAAGAACATGAGTTCTGTGGTACAGATGTTGCAGTGTTTGGAGCTGATGGAGATGAAGTGGAGACAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAGACACTCGTTTAAGAGAGAAATTTAATCGAATACAGTGGAGGTTTGGAGATTCAGGCCCAATCATTGCTGAAACTGATAGAAATAAGATCTCATATACTGATGATGAGAGATTCAGAGACAGACTGAAGCTGAATGATCAGACTGGATCTCTGACCATCAACAACACGAGAAACACAGACTCTGGACGTTATAAACTAGAGATCAATCAGAACACTAGGACCTTGTTTAAGGAATTCAATGTTACTGACGAAGAGAAGATGGTATCAATGGAAGAGGGAGAATCTGTCACTCTGATGATTGATGCTGAAATACAGAGAGATGATCAGATACTATGGATGTTTGGACCACAAGAGAATCTTATAGCTGAAATCAAAAGTGAGATCGCAACATTTGATGGTGCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAGAGGACTGGATGTCTGACCATCACAAACATCAGATCTGAACACACTGGAGTCTATAAACTACAGATCAGCAGCAGCAGAGGAACCTCGTATCAAAAATTCATTGTTATAAATAAAGTCGTGATGATATCAGTGGTGGAGGGAGAATCAGTCACTTTATACCCTGACACTGAAGTACAGAAAGATGATCTGATCGTGTGGACATTTGGATATGAAGACATTCGCATCGCTCAAATGACTAGAAAAACCAGAGAAACGTATGAAGGTACTGATGGGAGATTCGGAGACAGACTGAAGGTGGACAAGAGGACTGGATCACTGACCATCAAGAGCACGAGAACTGATCACTCTGGACTTTACAAACTACAGATGCGCAGCAGCAGCAGAGCAACCACAAACAAGACATTCAAAGTTGCTGTAAATTTGAAGAAAATATCAGCCAAGGAGGGAGAGACTTTCACTCTGAGGACCAATACTACAGTGCAGAGAAAAGATCAGTTAGAGTGGATGTTTGGAGATAAAAACTCTATCATAGCTGAAATCAAAGGAGGGATTGGAAAGATCTCTACATTTGACATTGCCGATGGGAGTTTCAAAGACAGACTGGGGCTGGATGAGAAGACTGGATCACTGACCATCAAAAACACCACAGCTGAACATGCTGGAGTCTATACACTGAAGATCGTCACCAGCAAAGCGACAACAATTAGGAGATGCAATGTTGTTGTCAGAGTGTTGAAGATATTTGAGATGAAGGGAAACAATGTGACTCTAAATCCTGATACTGAAATACAGAGAGATGATCTGATCCTGTGGATGTTTGGAGCTGAAAACAATCTCATAGCTCAACTGATTGGAGAGACCAAAGAGACGACATACGCTGATGCCGACGAGAGATTCAGAGACAAACTGCAGCTGGACAAGAACACTGGATCTCTGACCATCAGAAACATCACAAATGGACCTTATAAACTACAGATCATCAGCAGCAGAAGGTCCTTGTCCAGGAAATTCAGAGTTTTCATGTGTTGTGAGTACGGTCTGAAGACAGTGTCAGGGATGATAGGAGAATGTTTAATTCTAATCACTGATTTTAACATAGAAAGTGATGAGAAGGTACAGTGGAGCTTTGGAGCCAAAATTCTAGCAACTGGAATGAATGGAGACTCAAATAAGACTTCATACTGTGATGATGGGAGATTCAGAGACAGACTGGAGCTGCACCATCAAACGGGATCTCTCACCATCAAAAACACCAGAACCAGCGACACTGGAGTTTATCAACTAAAGTTCTGCAGCAGATGCGGAAAGAACATTTGCTGGGAATTTAGTGTTACCGTCAGTGTCACAAGGGGGAGCTTGCTGAAAAGCTTTTCATATGGTGAAGATTCAGTCGATGCAGCTGATATTGGTGGTTTAGTTGGTCTGTGGAGTTTCGTTATGGTTTGTGGGAAGAAAAGAAACGCTGATTGAACCAAACAATGATTTTATCAGAGAATGCAGATTTGGTCACCTCAGACATCTGTGCATCAGTATGTTGGGAAACTAACTGTATATCATCATCTGACTAAATATTATTTATTAAAAAATGTCATTTAAGTGTAAGTTGAATTGCATTATTGCAAAAACCATTTTGTTAAAATGTTAAAGCATTTTCACTTCAATTTTGTTTGTATATTACTTTTCACAATACAAATGGTTCTAAAGCAGCTTTACAAAGAATGGTGCCGTGCAAACCCACTGTGATATCTGACAATATGTGATATTTATTTGTAATTATTTATTGTATTATTGTAAATAAGTCTTGTTGCAGGGGTCATGAATCAGTCTTGTGTCAGGAGACATAAGCAATGTTAGAAAACAAAAGTTTTCCTTCATTTTTGATGAAATCTGAGAGCTTTCTGTTCCTCCATAGGCAGCAGTGTTACACATTCAAGGTCCAGAAAGGTAGTTAAGACATCACTAAAGTAATCCATGTGACTCCAGTGGTTTAACCTCAATTTTTATGAAGCGACGCGATTGCTTAGATTTGTTGTTGTTGTTTTTAAACATAATTTACCACTTATTACCCAAATAGTGTTCAGGTAACAATCTCATATCTCGTGAATGTGCATTGCAGATCAATATTTTCATAAATAAAGTGGTAAAACATGTTTTTTTGCACAAACGAAGCATTGTTTCATAAAACTGAGATTAAGTGTTTCCACATTCAGTCACAAGGGGGCACTACAATCCCCCTAAAATCATACTTAAAAAAAATAATCTGTCCCAGGCAAAACTCCTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467021 lncRNA upstream 5288 5948698 ~ 5948928 (+) True G406427
TU466739 lncRNA upstream 24287 5928182 ~ 5929929 (+) True G406168
TU467011 lncRNA upstream 54228 5899657 ~ 5899988 (+) True G406417
TU466781 lncRNA upstream 122475 5830084 ~ 5831741 (+) True G406210
TU466760 lncRNA upstream 126247 5756777 ~ 5827969 (+) True G406189
TU466784 lncRNA downstream 41991 6013408 ~ 6015647 (+) True G406213
TU466791 lncRNA downstream 53634 6025051 ~ 6025357 (+) True G406220
TU467052 lncRNA downstream 162426 6133843 ~ 6134043 (+) True G406458
TU467057 lncRNA downstream 164472 6135889 ~ 6136121 (+) True G406463
TU467055 lncRNA downstream 178182 6149599 ~ 6151122 (+) True G406461
CI01000299_05935373_05943285.mRNA mRNA upstream 10803 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05925030_05926229.mRNA mRNA upstream 27919 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_05903841_05913302.mRNA mRNA upstream 38904 5901464 ~ 5915312 (+) True CI01000299_05903841_05913302
CI01000299_05864998_05873333.mRNA mRNA upstream 80701 5863634 ~ 5873515 (+) True CI01000299_05864998_05873333
CI01000299_05844429_05845510.mRNA mRNA upstream 108551 5844161 ~ 5845665 (+) True CI01000299_05844429_05845510
CI01000299_05988564_06002758.mRNA mRNA downstream 16678 5988095 ~ 6003021 (+) True CI01000299_05988564_06002758
CI01000299_06018839_06023448.mRNA mRNA downstream 47422 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_06029307_06034445.mRNA mRNA downstream 57540 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06074050_06097303.mRNA mRNA downstream 102633 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06100005_06114087.mRNA mRNA downstream 128300 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
TU466818 other upstream 580637 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1026372 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1249591 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1448299 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1634075 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 266421 6237838 ~ 6300508 (+) True G406161

Expression Profile