RNA id: CI01000299_05974659_05985294.mRNA



Basic Information


Item Value
RNA id CI01000299_05974659_05985294.mRNA
length 1552
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000299_05974659_05985294
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5974391 ~ 5985606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTCCTGCTGGTAACTTACTGGAGTCGAACCAGCAACCGACTCTCTAACCAACAGCCCCAAGAATTTTGTAATTATTGGTATTAGATGATTTGTTAATTGCATTCAATAGCATTCAATATAACATCTGCAGCTGCATGTTAAGTTTTTGCTGTAGAGACCAGTTTCTAGCGTTTCGGAACAGTGAATCATTCTGCGAAGCAATTGATTCAAAGCATAGGTTCAAAGCTTCGGAAAGCTGTTTCTCCTTAGAGCCCTGCACAGGCCTCAAATTTAGGCCCTGGCCCTAAACGCTCAGACCCGAGCCCAGCCCATGTCCGACATCTTGTCAGAATTCTCGGCCCAAGCCCGACTGGAGCACTTCAGTCGTATCAGGAGATATTTGATAGACTATAACATTTCTACTGAGTTTGTTTCAGAAATATTTGAAACTGTTCTGGTGTTCAAATTGCTGAAGAAAATGATTCACCCGATTTTCTTCCATATGTGCCTGTGGTGTGTAGTTGGAGTTTTTAGTGTTGATGCAGTGACGCCAGTGTCAGTGACGGAGGGAGATTCAGTCACTCTGAACGTACAGAGAGATGATGAGATCGAATGGAGGTTTGGAGATACAAACATTCTCATAGCTGAAATCAGAAAGGACAATAAAATCGCGTGTTATGATGATAGTGCCAATGGGAGATTCAAAGGCAGACTGAAGATGGATCAGAATGGATCTCTGACCATCACAAACACCAGAATCACAGACTCTGGACTTTATAAAACAAGAAACACGAACACCCTGCTGAACACATTCAGTGTTACTGTCTATTCTCGTGTTCCGGTTCCTGTCATCACCAGAGACTCTCCACAGTGTTCATCATCATCATCATCAGAAAGGTCTTCTTCATGTTTACTGTTGTGTTCAGTGTTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAGCAGTTTATTGTCCAGCATCAGCGTGTCTGATCTCAGCGTCAGTCTCTCTCTACCTCTGGAGGTGGAACATCAGGATAAAAACACCTACAGATGTGTGCTGAACAATCCCATCAGCAACCAGACCAAACATCTGGATATCGGTCGACTTTGTTCTGAATGTTGCTGTTGTGGTTTCACTGAAGCTGCGATCCGATTGGCTCTCTCTGCTGTGGTGGGCGTGGCCGGGGTGGTCGTCCTGGTTTATGAATTCAGAACCAGAAAACTTCAACAGAAGAAGAGCGTGAAGAACGCAGCAACAAACACTGATCAACCAGATGAAGTTGCCTCTGAATGATTCCAGCATTATATCACAAGTAAATGTCATTTCCATGATTATTTCATTTTTATTATCATAAGGTTGATATGTCACGTCTTTAACACCCTTTGCATCTTATTACCTAATGTTAAATGTTCATAAATATCTCTGTTGATACAGTGACCCTGCTGAAGCTCCACCTAGTGTTTTTTTTTTCACTAACATCTCTTGCTGTAATATTTGATAGTATAAAACTTAATATTGCTTTTATTACTTTATGCCTCTTTGTTTTATAATATTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU468604 lncRNA downstream 4835 5963680 ~ 5969556 (-) True G407825
TU468606 lncRNA downstream 28366 5945375 ~ 5946025 (-) True G407827
TU468639 lncRNA downstream 43845 5929639 ~ 5930546 (-) True G407858
TU468580 lncRNA downstream 75920 5821575 ~ 5821591 (-) True G407801
TU468628 lncRNA downstream 198850 5774249 ~ 5775541 (-) True G407848
TU468662 lncRNA upstream 32936 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 39419 6025025 ~ 6025802 (-) True G407884
TU468667 lncRNA upstream 40509 6026115 ~ 6026325 (-) True G407885
TU468589 lncRNA upstream 44670 6030276 ~ 6030985 (-) True G407810
TU468608 lncRNA upstream 101558 6087164 ~ 6088221 (-) True G407829
CI01000299_05946615_05949088.mRNA mRNA downstream 25157 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 39559 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 49763 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05896205_05898855.mRNA mRNA downstream 75534 5896043 ~ 5898857 (-) False CI01000299_05896205_05898855
CI01000299_05856747_05860959.mRNA mRNA downstream 111405 5856716 ~ 5862986 (-) True CI01000299_05856747_05860959
CI01000299_06037407_06054548.mRNA mRNA upstream 50611 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06130943_06144384.mRNA mRNA upstream 143467 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06145156_06154533.mRNA mRNA upstream 159349 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06185794_06195015.mRNA mRNA upstream 199882 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 211000 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
TU468578 other downstream 50258 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 138402 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 518283 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1045573 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1423670 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 546395 6532144 ~ 6534655 (-) True G407899

Expression Profile