RNA id: TCONS_00019455


Basic Information

Item Value
RNA id TCONS_00019455
length 347
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_009713
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10264286 ~ 10292937 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTAGGCCGACATTTAGAACCCAGCTCTCCAACTCCTATCCCCCCTGTTTGGAGGAAAAATCAAATTGGCCCTTTAAAAACTACCGATATTAAACCTGGAACAAGATAAtgaaatattCGCCTGGCAGGCGAGTCATGATATCCAGAACTTCTCCTGTCAGCTTGGCAGCACCCACTTCTGACCCACCACTCGACACCATGGTGACCTTCTGGGCGGCACAGAGCGGCTTGCTGATCTCCTCTGCCATCTGCAGGAGTGGAGGACAAATATTAAGGAGTGATCTTATTACAGATAGCAGTAAACCTAGCATTCTGTCAGAGTCAATAAAAAAGTCACTCATTTT

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-141211-29 Predicted to act upstream of or within ion transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Orthologous to human MRS2 (magnesium transporter MRS2).

Ensembl:

ensembl_id ENSDART00000158767

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021892 lncRNA upstream 267545 10012335 ~ 10016713 (+) False XLOC_009712
TCONS_00021893 lncRNA upstream 267545 10013039 ~ 10016713 (+) True XLOC_009712
TCONS_00019448 lncRNA upstream 562120 9717781 ~ 9722138 (+) True XLOC_009708
TCONS_00021891 lncRNA upstream 755952 9526107 ~ 9528306 (+) True XLOC_009704
TCONS_00021890 lncRNA upstream 756037 9526080 ~ 9528221 (+) False XLOC_009704
TCONS_00021894 lncRNA downstream 85394 10378331 ~ 10379821 (+) True XLOC_009718
TCONS_00019461 lncRNA downstream 94782 10387719 ~ 10389787 (+) True XLOC_009719
TCONS_00021684 lncRNA downstream 324417 10617354 ~ 10617686 (+) True XLOC_009724
TCONS_00019471 lncRNA downstream 519859 10812796 ~ 10813628 (+) True XLOC_009726
TCONS_00019474 lncRNA downstream 565298 10858235 ~ 10859866 (+) False XLOC_009727
TCONS_00019452 mRNA upstream 497999 9779680 ~ 9786259 (+) True XLOC_009711
TCONS_00019451 mRNA upstream 506330 9762261 ~ 9777928 (+) True XLOC_009710
TCONS_00019449 mRNA upstream 522285 9726038 ~ 9761973 (+) False XLOC_009709
TCONS_00019450 mRNA upstream 525688 9726040 ~ 9758570 (+) True XLOC_009709
TCONS_00019447 mRNA upstream 558826 9713850 ~ 9725432 (+) False XLOC_009708
TCONS_00019456 mRNA downstream 25956 10318893 ~ 10327620 (+) True XLOC_009714
TCONS_00019458 mRNA downstream 36764 10329701 ~ 10342612 (+) False XLOC_009716
TCONS_00019459 mRNA downstream 37241 10330178 ~ 10345769 (+) True XLOC_009716
TCONS_00019460 mRNA downstream 53340 10346277 ~ 10369298 (+) True XLOC_009717
TCONS_00019462 mRNA downstream 120614 10413551 ~ 10422490 (+) False XLOC_009720
TCONS_00019443 other upstream 726155 9540033 ~ 9558103 (+) True XLOC_009705
TCONS_00019442 other upstream 757049 9526107 ~ 9527209 (+) False XLOC_009704
TCONS_00019438 other upstream 1047012 9237132 ~ 9237246 (+) True XLOC_009699
TCONS_00019392 other upstream 3550622 6730506 ~ 6733636 (+) False XLOC_009670
TCONS_00019368 other upstream 4844203 5382382 ~ 5440055 (+) False XLOC_009658
TCONS_00019457 other downstream 31612 10324549 ~ 10324665 (+) True XLOC_009715
TCONS_00019473 other downstream 548227 10841164 ~ 10856409 (+) False XLOC_009727
TCONS_00019483 other downstream 949623 11242560 ~ 11290883 (+) False XLOC_009731
TCONS_00019500 other downstream 1407709 11700646 ~ 11703337 (+) False XLOC_009744
TCONS_00019511 other downstream 1948553 12241490 ~ 12245896 (+) False XLOC_009752

Expression Profile

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