RNA id: CI01000299_06029307_06034445.mRNA



Basic Information


Item Value
RNA id CI01000299_06029307_06034445.mRNA
length 3567
RNA type mRNA
GC content 0.45
exon number 11
gene id CI01000299_06029307_06034445
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6028957 ~ 6034956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTAAAAGCTGCTCTAGTTTATCTGATTGCACCTATTCCTTTTCACTTGCTTACTATTTAAGGTTCTGAAATACCTTGTTGTTGACGTTTCTCCAAATGCAAAGTCCTATTTTAAAAAAGATATGCTGATAATGTTATGCACTTCATTGTTTTTGTTACTTTATTTGAATTTTATCATTGTTTCTTGCATACATCATGAAGCAATCTGACAAAACAATGTTTGAGAAAATGTAGCATCAGTAGATATTAACAGGTCAACATAATAAAAATTGTTTTGTTTTAAATCAGTCCGTCCTGTCAACAAGCGGATATTATCATGGATTGTTGTCAGTCTGGAAATGCAGCAGAGATGGAGGAGAGCTTGAACACTGGGGAAGATGATACAGATGAAGTTGAAGTCCGTGTGCGTAAGGCATCCTGGGAGCCCGCTGTATTCTCCACCATTGGAAAGGAGATCCATTATTTCGCTGGTCATGAGATCAGAATCTGGGAGTCTCTTGATTCATTTGGTTCTGTCATCTGGCCAGGAGCTCTGGCTCTGTGTCACTACCTTGAGTCCAATCGAGCAACGGTTGATCTTCTTGACAAGGCGGTGCTAGAGATTGGAGCCGGCACGGGTCTCGTGTCCATCGTGGCCAGTCTGTTGGGGGGTTGGGTGACAGCAACAGACCTGCCGGAGGTCCTCGGGAACCTGAGATGCAACCTGTCCAGAAACACACGGGGCCGCTGCAGATACACCCCGCAGGTGGCGGAGCTCTCTTGGGGTTATGAACTCGATAAGACCTTCCCTCATTCAGTCTACAGATACGACTACATTTTAGCAGCCGATGTGGTCTATCATCATGACTTCCTAGCAGAATTACTGGTCACCATGCGCCACTTCTGCCAGCCCGGAACAACCCTCATATGGGCCAACAAGACCCGCTTCGATTCTGATCTATTTTTTTTGGAGAACTTCAAAAAAACGTTCAATACCACCCTGCTGGCAGACAACGGAGAGGTTAAAATTTACTCTGCCACCACAAGAGACGAAAGTGGACTAGCGACGTCAAAAGAGACCAAAGGGGTTGCGAGGAAAGGAGAGGACCAAGATGAAGCGGTCAAGAAAGAGTCAAAGCAAGAGATTATTGAAGGAAAGATTAAACTGACAGTAGAACAGATGCAAGAATATGAAAAGAAAAATGTGCAAAGGAAACCAGGGTATGCTGATTTGGAAAAACAGGAGGAAACATTAAATTTGGAGGATGGAAATGTGAACAGTATCAAAGAAGAAGAGGAGGACAACACAAACCTTGAAACTGAGGACAGTGGAGATGAAGAGAACGACGGCTGCTCTGAGATGGATTCAACATTAGTAGAGCAGAAATCTGAGGAAGGAAGCACAGAGAAAGAGTATGTGAGATCATGGGCACCGACTATTTACTACAGACCTGGGAAAGAAGTTTACAATTTTTTGGGACAGGAAATCACAATTCAGGAGTCAATCGATTCTTACGGTGCTACTATATGGCCAGCGGCACTTGCACTTTGCCGATTCTTAGAAACACCGCAGGGTCGTCAACAGATTGATTTACTTGACAAATCTGTACTTGAGCTTGGAGCTGGAACCGGCTTACTTTCGGTTGTCATCACGCTGTTGGGTGCCAAACTCACAGCTACGGATTTACCCGAGATTCTGAGTAATCTGACGTGCAACCTCAACAGGAACACGAGAGGCCGGCGGAGGCACGAGCCCCAGGTAGCAGAACTCTTCTGGGGTCACAAGCTGGACGAGACCTTCCCTAAATCCACACACCAATATGATTATGTGTTGGCGACTGATGTGGTCTATCACCACGACTTCTTGGCCGAGCTGCTGGTCACCATGCGTCACTTCTGCCAGCCAGGAACTACTCTTGTCTGGGCGAACAAGGTCCGCTATGCCTCAGATCTGGGCTTCATTGACAACTTCCTCAGATATTTTGATATCACACTGCTTGAAGAGTTGGATGATGTGAGGATTTATGTAGCAACCAGCAAGACACCAGAGAAGGAAGGTGACCAGGTTCAAGAGACGAGCGAGAAAGTGGAGGACAACTGTGACCTTGAGTCAAACAAGCAGGATGCCGGGGAACCAAACTCTTCAAGCGAGACAGGAAACAATGCAGAGGAAGTGGAACAAGAGCAGGAATGTGACAATACTCAGAGTTTAGAAAACATCAAAAAGGAGAAACAAGTAAAGGAGGAACTCCAGGATTCTGGAAGATCTGTGGAGGAAGAGGAAGAACTCCAGGATTCTGGAAGATCTGTGGAGGAAGAGGAAGAACTCCTGGATTCTGGAAGATCTGTGGAGGAAGAGGAAGAAGCTGAACCTGACAACACAGAACCAGCTGAACAGAGATCCTGGGCTCCCACTGTCTACTACAGTCATGGCAAGGAGATCTACTACTTTCTGGGTCATGAAATCAAGATTCAGGAATCCATAGACCATTATGGCAGCGTAGTATGGCCAGCGGCAGTGGCCCTTTGCCGATTCCTGGACACCGCAACAGGCCGACAGCAGATCAATCTACTTGACAAATCGACCCTGGAGCTTGGAGCAGGAACAGGCCTTGTCTCGATAGTTGCCACACTTCTAGGTGCTAAACTGACAGCCACAGATCTGCCAGAAATCCTTGGAAATCTGAGGTGCAACTTGAACCGGAACACCAGACAGCAGCGAAAACATGAGCCTCAGGTTACAGCATTGGCATGGGGCTACAAACTAGAGGAGATGTTTCCCCGCTCCACCCACCACTATGATTATGTATTGGCAGCTGATGTGGTCTATCACCACAACTGTCTCACTGAGCTTCTCGACACCATGCGTCACTTCTGCAGACCGGAGACAACTGTAATCTTTGCAAACAAGGTCCGGTATCAGTCCGACCTGGTATTTATAGAGAACTTTCAGAAAGCTTTTAACACCACATTACTGACAGAGCTGGATGAGAAGGCTTTCCAACCTACACTGCTGGCAGAGGTAGAAGAGGTGAAGGTCTGCATGGCTGTGGCGCATGGACGGCCGTTTGTTTAATGAACCACACTGTAGACAATTCCCATTTGTTTTAGAAACAATCTTTAGGACTGGATGACTGGCCAAATCCTTCTACAACAACGGTTTGGCAGTGATAATTGGACTGGCCAACTTACCAAATCTTCGTATACCTGCTATACGACATGTTGCGATTGACACGATCCTTTGAATCAGAAATTTTAATAAGATTTCAAACCACATAATGGCTGACCAAATAAGATTTTTTTTTACATTTCTGACTCAAATCAACTTATTTACCTGTGGTTTTGATTCATATTACAAAACATTTATTTAATGTTTTTGCCGTTTACACTAGTATATATGTGTGGTTTCAAGTGGTATTTTTTTGAGATCCATTGTTGAACAGTCAGATCAGAATTCACATTGTTTTTGTCATCTTTTAGTTTGACAGATTTGATTTAGACTGATTGAAAATAATAACAGTAATTCCTCCAGATGAAAAACAAATCTGAATTGTCTGCATTGTAAAGAAAAACATGCTGATGTTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU466791 lncRNA upstream 3600 6025051 ~ 6025357 (+) True G406220
TU466784 lncRNA upstream 13310 6013408 ~ 6015647 (+) True G406213
TU467021 lncRNA upstream 80029 5948698 ~ 5948928 (+) True G406427
TU466739 lncRNA upstream 99028 5928182 ~ 5929929 (+) True G406168
TU467011 lncRNA upstream 128969 5899657 ~ 5899988 (+) True G406417
TU467052 lncRNA downstream 98887 6133843 ~ 6134043 (+) True G406458
TU467057 lncRNA downstream 100933 6135889 ~ 6136121 (+) True G406463
TU467055 lncRNA downstream 114643 6149599 ~ 6151122 (+) True G406461
TU467064 lncRNA downstream 148238 6183194 ~ 6183531 (+) True G406470
TU466733 lncRNA downstream 154823 6189779 ~ 6197674 (+) True G406162
CI01000299_06018839_06023448.mRNA mRNA upstream 5447 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_05988564_06002758.mRNA mRNA upstream 25936 5988095 ~ 6003021 (+) True CI01000299_05988564_06002758
CI01000299_05955084_05970603.mRNA mRNA upstream 57540 5954216 ~ 5971417 (+) True CI01000299_05955084_05970603
CI01000299_05935373_05943285.mRNA mRNA upstream 85544 5934903 ~ 5943413 (+) True CI01000299_05935373_05943285
CI01000299_05925030_05926229.mRNA mRNA upstream 102660 5924670 ~ 5926297 (+) True CI01000299_05925030_05926229
CI01000299_06074050_06097303.mRNA mRNA downstream 39094 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06100005_06114087.mRNA mRNA downstream 64761 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06116505_06128180.mRNA mRNA downstream 80682 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06177821_06180061.mRNA mRNA downstream 142865 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06217616_06220842.mRNA mRNA downstream 182660 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
TU466818 other upstream 655378 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1101113 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1324332 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1523040 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1708816 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 202882 6237838 ~ 6300508 (+) True G406161

Expression Profile