RNA id: CI01000299_06130943_06144384.mRNA


Basic Information

Item Value
RNA id CI01000299_06130943_06144384.mRNA
length 3470
RNA type mRNA
GC content 0.42
exon number 10
gene id CI01000299_06130943_06144384
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6129073 ~ 6144868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATTGTTGTTTCAGAAGGATTGAATGTTTATGGTTTTATTCATGTATGTATCTGCTAAACCAGGGGTTTTCAAACTAGTTAAGAGAAAAAGAGTAAAAAATAATAAGAATATAATTTAACTAAATACATTTGATTTTAAATGTTATCAGGCCAGTCTCGTCAGGACAACATTCAAAGTTTGTCATGAACTTTACTTTGCAGGTTGTCTTTAAGCTCTAGATTCCTTTATTTCCAGTAAAACAGATTCTCCTGAACTCCGTCTGGTTTTGTCGCGTCGCGGTGTGTGTGCGCGCGCGCGCTCCTCCGCTCATGCGTCACCATCAGCTCAGGCGCGTGAGTTTTTGTTGTCAGTCCCGCGCGCTTCACTTTACCTGAGAGGAGCGGCGCGTGTTCACTTACCGCGAGGATTTGTTACAAATACTGAGGAAAATATAAACTTTATTTTGTGGATAGAATTCTGTGTGTGTGTAACATCAGACGCGATGCAGCAGCAGCCGAACGCGGATCCTGCAGATGTGTTTGTGAAGCGGCGGCGGACGGCTCTCTGGTGTTCAGTGTCTCTGTTTGGACTCTCAGTTCTGATTCTGGTGGTCGGGCTGCTGTCAGCCACGCAGACGGATAATGTGGCCGTGTCTGGATACTATCCCGGGATTATACTGAGTTTTGGAGCATTCTTGGGCGTTGTTGGTCTGAACCTGGTGGAGAATCGCCGACCGATGGGAACACAAGGCACATCCGCTGTCAGATCGATGAGCGCGATTGGACACGTGGTCAGTAATGCTGAACGTGATTGGCTGACATGTCAGCTGAATCGGTGTTCGTGTGTGTTTGAATCAGTGAGATCTGTCGCATTTCTCTTCATCTTCAGCTCAAACGCTCTTCTATGTCATAATCTTCCAGCAGATGCTCTCGTCCCCTTCAAATACAAGATCACTACAACATCTGCCCTTGAACGTTTACAAGTGCTTCTGGTGGCGTCCATCATCTTCATCAGTCTGGGAGTCGTGTCATGTTTCCTCTGCTCCATCATCGACGGCATCATCGCGGCAGAGTTCATCGAAAGGAGGCCACTGATGGAGGGCCGCTGTGAGTTTTACTCCAGCTCATCTTCTTACTCCTATGACAGCTACTACACTGAGGTTCACTGTAATCAGTGTAAAATGAAGGTGAAGAGCAACACCTGCTACTGCTGCGACTTATTCCACTGCGACAGTCTGGACTATCAAGTGCAGTACTACGAGTTCACGGGCGTCAGCAGCTGCTGGGACGTGGTGAATCTGTACCGTCTGCTGTGGGCCGGTGTGATGCTCAACGTGCTCGGAGTGTTTCTGGGCATCATCACCGCCGCCTTACTGGGAGCCTTCAAAGACCTGCATCTGAACGGTTACCCAGCTCCATCCGCAGGTCCGTCCGTCCCCGAGGTCTCGGCCTCCCCGTCCGATGAGACTCAGCCGGCCGCTCAGAGCGGGACGAACCCAGGCCCACCGACTCAAACCTCATCTCAGGACACCAGCGGATACATGCTGACTCCAAACGCTCCCTCGCTCTACGCTCACTCCTTAGGGCCCTTTGAGAAGCCTCCGCCCTACGCCTGCTGAAACACCCAAACCAGGAACACTGACCTCTGACGGGACGCCTGACCCGTGAACGTGAAGATCTGTGTGACCGTCGCCGCTAATGACCTCTGTAATCGTCAGTGTTTCTCGTAGCAAATGTGATCGATGTTGTTCTTCAGTAGTTTACCTCTGAACTTTAATGTTTAACTCCCTGTTCCTGTGGTCGGATCTTCATTGTTTGATTCACCGAATCACAACACAAACGCTTCCGGCTGCACAAGCTATTGTGTTGTGAAATGTGTCCGACTCTAGTCATAACACAAGAGTACAACACAATGCTTTAGTCTTCTTCTGCGGGCAGATCAACTAGTCATGAGTTTGAAGAGAATCTGACTGAGAGTTAGTGTCATGTTTATATCAGATTCCTGAATAACACGTATGGTTTAATAACAGGTTCCATTAGTTAACATGAACTAACAACAGTTGCTGAACAGTTGCATTTTTATTAACTAATGTTAAAGATTAACTCTTTCCCCGCCATTGACAAGTTTTTCCGGGAATCCATGCTTTGACTGTTATACGGTAGGGGGCACTATTACACATCTCTGGATCAAAACACAGGTGAAGAAGCAGCAGAAACAAGCGATACAAGCACTGCTGACGCACATAAATAACACGATCATCAAACCTTCAACAGAATAGAAATCAAAACTGTCTAACGTTACTGAATGAAATGTCGAACCCATGAAGAGGAAACGACCGTAAAGCTTTGAGGTGTTGATGGACTCTATCTACTCCATCTGTGTTTTGATCATACGGACAAAAACATGATTTTCTCAGCTTTTTATTCAAAATGTAACTTTTTTTTTTTATGAAACGTACCCACATTCAAGTGATAAAAAAGAATGCATGAAGCTAGAATAAAATGTTTTTGTTGTTTAAAAGCAGAGGATCTGTTCTTTCTTTTGATAATGTTCAGATATTTATACAACAAAATATTCTGGGGGCATGAAAGTTTTGTGAAAATCATCAAAAATGCTGCTGCTGGCTGGCTACTTTTTAAAAACTGTCAGGAGGGGAAAGAGTTAATAAATACTGTAATGCATTAACTAATGGGACTTTATTGTAAAGTGTTACCTCATGTTTTCTAACAAGATTAAGAATATTCTGTTTTCACAAAAGTATGAATGTTCTTATGTTTTTTCTCATGTCCAAAGGCTAAACTGTAGAATTATTTGCTGAATGTTCTCAAAGTTAGGATAACCACCAATTTGTCTTAAAGCCCATGAATTTATTTGGTATTTTCAAATAATAAACATTGCTGCTGCTATGACTATTACTTTTAGATTTTATTTTCATAATGTAGTTATTGTCATTAACACCTCCTCACACACTAAAAAATGAGCATGTGTTTGCTACTTAAAGAGTTAATAGATGGACAAATATATGGTTAGGATTCACTAATGTGAAGTTTTAAATGTTGTACAAGACAAAACGACGCTATAATGTACAATCAGACATCAAAGCCTGTCATTTTATTCTCAAGATGTTCTTAACCCGTTCTGCAAGTTATCAGTGTGAATTAAAGACTTTTTAAGAAAATTTCAGCTAAATCATGAGCTTTTCTTTGGTTTATAGGTTCATTTGTTCTTGAACATTACAGAATTACCTTCAGTTCAGTGTTCTGTCATTATTTTTTATTGCTAAATTCATTCTAGTATTTTATTCACATCCATTTTGTGATGGAGATTGTGTCTGAAAATATGATCAACCAAAGTCCCCTAGATTTAAAAATGTCTCTATAAAGAATGAACAGTTTTTCCACGTGATTTTGTTTTCAGAATTTTCAGCATTGTCATGTTTTCTGTCCAGTCTGCAACACAACCAAAACAACCACTTTTTACCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468684 lncRNA downstream 14583 6108478 ~ 6114490 (-) True G407895
TU468707 lncRNA downstream 21820 6099848 ~ 6107253 (-) True G407912
TU468704 lncRNA downstream 29615 6093291 ~ 6099458 (-) True G407909
TU468744 lncRNA downstream 37192 6091491 ~ 6091881 (-) True G407949
TU468762 lncRNA downstream 40347 6088502 ~ 6088726 (-) True G407967
TU468766 lncRNA upstream 629 6145497 ~ 6145924 (-) True G407971
TU468770 lncRNA upstream 38267 6183135 ~ 6183501 (-) False G407975
TU468771 lncRNA upstream 38267 6183135 ~ 6183535 (-) False G407975
TU468772 lncRNA upstream 38323 6183191 ~ 6183501 (-) False G407975
TU468773 lncRNA upstream 38323 6183191 ~ 6183535 (-) True G407975
CI01000299_06037407_06054548.mRNA mRNA downstream 74525 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 143467 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 179839 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 194241 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05919510_05924061.mRNA mRNA downstream 204445 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_06145156_06154533.mRNA mRNA upstream 87 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06185794_06195015.mRNA mRNA upstream 40620 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 51738 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 63744 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06242885_06246604.mRNA mRNA upstream 97128 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
TU468578 other downstream 204940 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 293084 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 672965 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1200255 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1578352 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 387133 6532144 ~ 6534655 (-) True G407899

Expression Profile