RNA id: CI01000299_06145156_06154533.mRNA


Basic Information

Item Value
RNA id CI01000299_06145156_06154533.mRNA
length 2934
RNA type mRNA
GC content 0.51
exon number 19
gene id CI01000299_06145156_06154533
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6144955 ~ 6154533 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAAGGCGGCTGAAGCTAACATCAGCGCTCTGACTGAAGAGAGAGACCGGCTGCTGGAGTCGCTGCAGGCCGTCAGAGACCAGAGAGAGCAGCTGGAGAAGAGCGAGATGATGGTGCTGTTGAGGCAGGAGCTGCTTTCTGCTTGTGCTGAGAGAGACCGTCTGCTGGCAGAGAGAGCGAGAGATGCTGCATGTAACCAATCCAGCGCTTCCACCAGTATGACATCACTGACTGAGGGAGGAGACCTTCAGGAGATCCTGCAGGGCGTCAGAGAGCTGATCCAGGTCCAAGGAGAGCTCAAACAGAAGAAGCATCAGGTGTCAGATCAGCTGAGTCCCACAGAGAAGCAGAAAGTTCAGCTTGAGCAGATTCAAGCTCTCAGGGAGGAGCTGGAGTCTCTGAGGAGTCAGAGGGAGGTGCTCCGGAAAGACCTTCAGGAGGCAGCAGCGATTTCTAAAATGTATCAGGACTTACTGCATGTGACTAAGGAGGAACTGAAGCAGCAGCAGAAAGAGAAGGAAGACCTGATGGAGCAGAGTGCAGAGAAAGAGTCCCAGCTTCAGCGGCGATTGAGTCAAATGAGTGAAGATCTCTCGGCCGTACAAGACCAGCACAACACAGAGATCCAAAACCTCCAGACAAACCTCACCTCGCTTACGGAAGAGAAGGATGAGCTCCTGGAGACACTGAGGAGAACGAGAGAGGAGGGAGACCTACTGAGACAGGATCTTCAGAAGAGTGAGCAGACGAGAAACCGGCTGACCGAGGAGCTCGAGTCTCTCACTGGTGTGACCGATCAGCTGGAGAATGAGAAGACTTGTGCTGAGCAGGTCCTCGAGTCTTTAAGAGACGTCACAAAAGAGAGGGATCAACTCAGACGAGAGCTGGAGGGAAAGCTGGAGAAGCTGACACACATTGAGTCAAAAGCAGAGAAGCTGGAGAAACAGAAGATCCTGCTGGAATCTGAAGTCCATTCTCTCAGTCAGTCTCTCACTGAGGTGAACTGTAGCGTGTCTTCTGATCAGCTCAAACACAGATCTGCACATCTGATTTCTGAGATTGATGCATCTGATGGGAAGCTGCAGGCGGCGTTTGCGAAGCTACAGCTAATCATCGATCGTCCCACTGACGCTTTATCTGAGGTGAATCGTGAAGAATGGACTGTGATCTATCAGCTGCTGCAGTTCATTCCTTTGGCTCAGAGGAGCGTCCACGCGACACACACCACTAAAACCACCAGACTGAATCACGTGCTGATCAAGACTGCGGAGGCGTACAGGAGACTAGCGCAGCGCTGCAAGACACACTTCGAGACGGAGGTGCAGCGTGACATGGCTTCGTTTGAGGAGTCTCGACTCCAGGACCTGCTCGTCCTCATGACTCAGGATCCGTCACGGGCTCTCCGATCTCTTCAGGATGACTTCCAGCAGGTCTGGGATCAGAGACTGTCACGTCTGGTGGAAAGACGTCAACAGTACCTGCAGAAATTGGAGAGCATTCTAAGGGTTCTGGAGGGCGGTTTAGCCAAACACGCAGTGATGATGTCAGAGGAGTGTCAGCACAGGACTCGTGAGCTCGAGGATCTCAAGGCTCTGCTAAGATCTCCTCAGACGGCCGCTATTGTACATCTGCACGAGCAACAAATCGCTCGTCGCACTAAAGCGACCGAGCATCTGAACACACATTATGTTGCTCTGCTGAACGAATGTGAGTCTGAGAGCTCCCCGCTCAGATCAGCATCTTCTGAGTCTGAGCGGCGGCTGGAGGATCTGAGAAGAGAGACTGTAACTCTGCTGCAAGCGCAAAACGGCACCCTGCCCAAAACTGAGGCGGAGCTTCTGCGGGACAATCAACATCTGTCACTGCAGCTGCAGCAGACGCAGAAGCAGATGGAGGAGATTCAGGATCAGATGAAGGAACTGAAGGTTCAGTCTGATTCCTTGAACCAGAAACATCTTCAACTCCAGGAACTCGGTGCCCAGCTGAAGCAGAAGGAAGCTCTCATCCAGAAGTTAGAAGCCAAACTTAAAGAGTCAGAGGTCCTGTCTAAGAGGAACATGACACCAGCTGCCGCTGAACTCGCCGCCCTGAAGGACAAACTCGTCAAAATGGAGCTGGATCACATCGCAGTCACCACAAGTCATGAGAAAGAAATCGCACAGATGAGCTCCATGTTGGAGCACAGAGCCGACGTCATTCGCAAGCTGAAAGAGACCCTGAGGAAAATGCAGCAGGACGATGAACAGTCCTTCGCAGACGGTGAGGAGTTTGACCTTAAATTGAGCTCAAACAGACCAGTCACATCAACTCAAGACAAGAAGATGGAGGAGTTGCAGAAGAAGAACGCTCAGTTTGAGAGTCTGCTGAGCAAACAACAAGAGGAGATCAACAAATGGAAGCGGCGAGCGTACAGGATTAAGGAGAGCAGGAAAGACGCTCTATCTACTCCAACCAAACGCCAGCCTCCTCTGACGGAGACTGAAGTCAACTCGCCCAAGAAGGCCTTCCTGGACTCTCCCAAGAGCAAGTTCTTTGACGTGCGCTCCAGTGTTCCCATCTCCCTCAACCATCCCACGCAGTTCTTCGACAACTCCAGCCTCGGGACGGTTCCAGATTCCAGCGCAGCCGTCGCATCCAGTGCCGCACCGCTTGACGACTGGTGGAAGATTTCTGACGCTTCGCCCACAAAACACGATGCTAGCATCAATGCTAACGCGTGCCCAACGCAGTGATCTGCCCTCATGCCGTGGAAGTTGCCGTGTTGGAAAGTTCTGAAGTCATGCATTGAAATGCATTTTATGATGCACAAACTAATGTTCACAGATCTTCACAGCTGGAGCTTCAGTGAGCACTAAGATTGTTCTTTTACAAGTCTAGATTTTTCTTTCATGTATGTTTGCCTTTTTAATGTTGTGGTGTTTTATGTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468684 lncRNA downstream 30465 6108478 ~ 6114490 (-) True G407895
TU468707 lncRNA downstream 37702 6099848 ~ 6107253 (-) True G407912
TU468704 lncRNA downstream 45497 6093291 ~ 6099458 (-) True G407909
TU468744 lncRNA downstream 53074 6091491 ~ 6091881 (-) True G407949
TU468762 lncRNA downstream 56229 6088502 ~ 6088726 (-) True G407967
TU468770 lncRNA upstream 28602 6183135 ~ 6183501 (-) False G407975
TU468771 lncRNA upstream 28602 6183135 ~ 6183535 (-) False G407975
TU468772 lncRNA upstream 28658 6183191 ~ 6183501 (-) False G407975
TU468773 lncRNA upstream 28658 6183191 ~ 6183535 (-) True G407975
TU468718 lncRNA upstream 66233 6220766 ~ 6222379 (-) True G407923
CI01000299_06130943_06144384.mRNA mRNA downstream 87 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06037407_06054548.mRNA mRNA downstream 90407 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 159349 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 195721 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05927821_05933216.mRNA mRNA downstream 210123 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_06185794_06195015.mRNA mRNA upstream 30955 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 42073 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 54079 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06242885_06246604.mRNA mRNA upstream 87463 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 101324 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
TU468578 other downstream 220822 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 308966 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 688847 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1216137 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1594234 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 377468 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000035 False 8469 mRNA 0.53 58 NC_007112.7 260039 ~ 296057 (+)