RNA id: CI01000299_06177821_06180061.mRNA



Basic Information


Item Value
RNA id CI01000299_06177821_06180061.mRNA
length 454
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000299_06177821_06180061
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6177821 ~ 6180191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCTGCTTATATGCCTGCTATTGCCTGCTTTTCCCCATATGCATCTAGCGACGCACCTTTAGTCAAACATGTTGTTCAGCTTGTTGACTCTCTAGTGTGCTTGTTTATGTGGAACAGTGTAGAAGAAAGTAAGGAAATTACAATGGAATTAATGAAGCTTTGGAAGTTTTCTTTCAGTGTAGCGAATGAAGAGCTCTTCAGACATGTGAAACATCTGTCAGTCTGTGTGCTGCTCCACAAACCTTCTGCTTCGACTCGCTTTGACCTGCAGACCAAACACACAAACTACCTGTCAGTAACATGGAGGATTTTCAATCTTTAATCTTACATTTAACGTATTTTAAGCATTTTAACATCACACACATCTCCTCTAAAGAAAATGTAAAGCAAACTGTATTTCAACAATCACACAGAAAACACATTATGCCATATATTTTCCCCTATTGTTTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467055 lncRNA upstream 26699 6149599 ~ 6151122 (+) True G406461
TU467057 lncRNA upstream 41700 6135889 ~ 6136121 (+) True G406463
TU467052 lncRNA upstream 43778 6133843 ~ 6134043 (+) True G406458
TU466791 lncRNA upstream 152464 6025051 ~ 6025357 (+) True G406220
TU466784 lncRNA upstream 162174 6013408 ~ 6015647 (+) True G406213
TU467064 lncRNA downstream 3003 6183194 ~ 6183531 (+) True G406470
TU466733 lncRNA downstream 9588 6189779 ~ 6197674 (+) True G406162
TU467072 lncRNA downstream 26643 6206834 ~ 6207044 (+) True G406478
TU466767 lncRNA downstream 85563 6265754 ~ 6266230 (+) True G406196
TU466709 lncRNA downstream 99228 6279419 ~ 6286426 (+) False G406142
CI01000299_06116505_06128180.mRNA mRNA upstream 49371 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06100005_06114087.mRNA mRNA upstream 63358 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06074050_06097303.mRNA mRNA upstream 80288 6074050 ~ 6097533 (+) True CI01000299_06074050_06097303
CI01000299_06029307_06034445.mRNA mRNA upstream 142865 6028957 ~ 6034956 (+) True CI01000299_06029307_06034445
CI01000299_06018839_06023448.mRNA mRNA upstream 154311 6018839 ~ 6023510 (+) True CI01000299_06018839_06023448
CI01000299_06217616_06220842.mRNA mRNA downstream 37425 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06223295_06227054.mRNA mRNA downstream 42701 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06233485_06239858.mRNA mRNA downstream 52381 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06269853_06274289.mRNA mRNA downstream 89411 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06312445_06318421.mRNA mRNA downstream 131849 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
TU466818 other upstream 804242 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1249977 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1473196 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1671904 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1857680 4295533 ~ 4320141 (+) True G405842
TU466732 other downstream 57647 6237838 ~ 6300508 (+) True G406161

Expression Profile