RNA id: CI01000299_06185794_06195015.mRNA


Basic Information

Item Value
RNA id CI01000299_06185794_06195015.mRNA
length 2131
RNA type mRNA
GC content 0.53
exon number 8
gene id CI01000299_06185794_06195015
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6185488 ~ 6195015 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTATTTACCATTGAGCAAGTGATGGTTCTCACTCCTCCATCAGTGAAGGGCTTTATCCTGAGGAAGGTCCACGTTCACCTCCTTCACCTCGACATGGACATCGGCGGCCTGACTACGGTGGTGGCCAACTCGGCGTACATCTCGGCCCGCGGCAGTTTCGACGGCACAGCCAACCCGGCGGCCAACCGAGACAAGAAGTACCACGACAAGCTCAAGCTGCCCCACATCACGTTGTGCGAAGATCTGCGAGAAACCCTGGATCTGCAGTTCAAGAGCATCTGCGTGGAGCAACCCATCGGAAAACGGCTGTTTCAAGAGTACCTGGAAACCACCAGCGAGTACAAGGGCCCGAGTCGTCTCTGGAAGGACGTGGAGGCGTACGACACGGCCGAGGATAAGGATCGAGTTCAGAAAGCCACGAAAATCCTCCAGCGCTACATGGAGCCCTCAGCCAAGCTCTTCTGCCCGTTTTTACCCGAGAACGACATCACCAAGGTGAAGGAACGACACCAGGAGGCGGCGGACGACCTGTTCGTGGAGATCCAGGCCAGCGTCTTCAACTTCCTTAAAGAGGTTCCCTTCACCTTCTATCTAGAGACCATGTACTTTAAGCGCTTCTTGCAGTGGAAGTGGCTGGAGATGCAGCCCATAGGTGAGGACTGGTTCCTGGACTTCCGTGTTCTGGGAAAAGGTGGATTCGGGGAAGTGTCCGCCTGTCAGATGAAGGCCACAGGGAAGCTGTACGCCTGCAAGAAACTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGAGCCATGGTGGAGAAACGGATCCTGGCTCGAGTTCACAGTAGATTCATCGTGTCGCTGGCGTACGCCTTCCAGACCAGAACAGAGCTGTGTCTCGTCATGACCATCATGAACGGAGGAGACCTGAGGTATCACATCTATAACGTGGACGAGAATAACCCCGGGTTCTCTGAGGCCAGAGCCTGTTATTACGCTGCTCAGATCATCCAGGGCATGGAGCATCTCCACCAGAAGAGAATCATCTACAGAGACCTGAAACCAGAGAACGTCCTGCTGGATAATGAAGGGAACGTCCGGATCTCAGATCTCGGTCTGGCGGTGGAACTCGCAGACGGTCAGGAGAAAATCAAAGGCTACGCTGGAACACCAGGGTTCATGGCCCCGGAGCTGCTGAAGGGCGAGGAGTACGATTACTCCGTGGATTACTTCACTCTCGGGGTCACGCTGTACGAGTTCATCGCCGCTAAAGGACCCTTCAGGACTCGAGGAGAGAAGCCGCTGATGTTCTTGACTGTTTGTGCTGCTCAGGTGGAGAATAAAGAGGTGAAGAAGCGGATCCTGAACGACCCCGTGACCTACTCAGAGAAGTTCAGTGAGAACGCCAAGTCCATCTGTGAAGCTCTGCTGGCCAAAGAGGTGGACAAGAGACTGGGCTTCAAGAACGGCACGTGTGACGAGCTCCGCGCTCATCCGTTCTTCAGCGAACTCAACTGGAGGAAACTCGACGCAGGGATTCTGCCGCCTCCTTTCGTCCCTGATTCCAAGACCGTCTACGCCAAGGATCTGGACGACGTGGGCGCGTTCTCCACGGTGAAGGGGGTCGGCCTGGAGGACGACGACAAGGTGTTCTTCGACGAGTTTGCGTCAGGAAACATCTCCATCCCGTGGCAGGAGGAGATGATCGAGACTGGCATCTTCGGCGAGCTGAACGTGTGGGGTCCGAACGGAACGGTGCCCAACGACCTGCGCCGGGAGTCCATCCTGGAGCAGCCGCCGCCCAAATCCTCCACCTGCAGCGTCTCATAGTCACACGGGCGCAGAACTGTACTGATCACAACCACATTTACTTCCAGCTTCAGCTATTTTAAAGGGGGCGTCGCTGTCAGTATTTACAGTAGTGATTATTGATTTTGAGTTTATTGAACCATAAACTGAGTTCCAGCGCTCAGTGAGTTTACATGCACTCTTCTGTTCAAGCATGACTCGCATTAGGCTTCTAAACAGAATATCTAAGAATGAGGAAAGAATAGAGGGAAACGCTTTGCAGTCGTCTTTTTGACATCCATACAGGTCAGTGAGTGATAAAAACAACCGTATGTGAAATTAAATAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468771 lncRNA downstream 1953 6183135 ~ 6183535 (-) False G407975
TU468773 lncRNA downstream 1953 6183191 ~ 6183535 (-) True G407975
TU468770 lncRNA downstream 1987 6183135 ~ 6183501 (-) False G407975
TU468772 lncRNA downstream 1987 6183191 ~ 6183501 (-) False G407975
TU468766 lncRNA downstream 39564 6145497 ~ 6145924 (-) True G407971
TU468718 lncRNA upstream 25751 6220766 ~ 6222379 (-) True G407923
TU468734 lncRNA upstream 31397 6226412 ~ 6232275 (-) True G407939
TU468784 lncRNA upstream 194361 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 197029 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 222111 6417126 ~ 6432767 (-) True G408001
CI01000299_06145156_06154533.mRNA mRNA downstream 30955 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06130943_06144384.mRNA mRNA downstream 40620 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06037407_06054548.mRNA mRNA downstream 130940 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 199882 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 236254 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_06197276_06199730.mRNA mRNA upstream 1591 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 13597 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06242885_06246604.mRNA mRNA upstream 46981 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 60842 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
CI01000299_06268189_06268676.mRNA mRNA upstream 73174 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
TU468578 other downstream 261355 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 349499 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 729380 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1256670 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1634767 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 336986 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000033 True 4056 mRNA 0.48 7 NC_007112.7 245076 ~ 258138 (+)