RNA id: CI01000299_06208641_06214104.mRNA


Basic Information

Item Value
RNA id CI01000299_06208641_06214104.mRNA
length 2021
RNA type mRNA
GC content 0.59
exon number 12
gene id CI01000299_06208641_06214104
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6208612 ~ 6214104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCGAGCCCTGTGTGCAGTGCTGTGCCTCGGCCTGGTGGCGGCGCTGCAGCCGAAGCAGGTCCACAAAGCGCAGCCCGGCGTCTACGGACAGCAGTGGGTGACGGAGAACTGCAGGCGGCTCTCCATCCTGCTGAGGCAGAAGAACTCAGCCGTCCGTAAGCTGGGCGCGGCTGCGGTGGCGCTGGAGCGGGACGAGACGCTGGCGCAGCCGGAGAAGCTGTTCCGCGTTCACACGCTGGAGGTGTTTCAGCGCGAGCTGAACGAGAGCGAACGCTCCCTCTTCCAGGCCGTGGAGGGGCTGCAGAGGGTGCTGAAGGGGAACTTCAGAGACGTGGTCAACATGAAGGACAGCAGCCGGCAGAGACTCCAGTCGCTCAGGGAAGCCGCCATCAAGGAGGAGCAGGAGTACATGGAGCTGGTGGCAGCGGAGAAACACCAGCAGGAGGCGCTGAAGGTGGCACAAGACCGAAACAAAACCCTGTCCATGCTGGATGAGATCCTGGAGGATGTGAGGAAGGCCGCAGACCGGCTGGAGGAGGACATCGAGGAGCACGCCTTCGACAACAACAAACAGATGAAGGGGGTGAATGTGGAGGCTGTCCTGAGGGTGGAGGAGGATGAGGAGGACGGGAAGAGGAAGAACGTGTCACGGCAGGAGGACAAAGGCAATCTGGGGCTCAGCATGCTGATCGACTCGCAGAATAACCAGTATGTGCTGACCAAACCACGAGACTCCACCATGCCCCACGCCGACCACCACTTCATCAAGGATCTGGTGTTCGTGGTCATGTTGTCTCTGCCGTGCGGGTGGCTGTGTACACTGATGGGACTGCCGCCCATGTTCGGTTACATCATCTGCGGGGTTCTGCTCGGCCCATCAGGACTCAACAGCATTAAATCGATGGTTCAGGTGGAGACGTTAGGAGAGCTGGGCGTGTTCTTCACTCTTTTTGTGGTCGGTCTGGAGTTTTCACCCGAACGCCTCCACAAGGTGTGGAAGATCTCGCTGCAGGGCTCTGGATATCTGAGTCTCCTGATGGTGGCCGCTGGCCTGCTGTGGGGTCAGATGCTCGGACTTCACCCCACACAGACCGTCTTCATCTCCAGCTGTCTGTCTCTCTCCAGCACTCCTCTGGTGTCTCGCTTCCTGGCCGGAGGATCCAGAGGAGAGTCAAAGGAGGGTGAGCTGGACTACAGTAGTGTTTTGCTGGGCATGCTGGTCATGCAGGACGTGCAGCTCGGTCTGTTCATCGCTGTCATGCCCACATTGATTCAAGGAGGAAATGGAGACACAGACGGTGTGCTGATGGGAGTGTTGCATGTTCTGGTTCTGCTGACTCGTGTCCTGGTGTCGCTGGCGGCCGTGCTGCTGATGTGTTGGCTCCTGCGCTCTCATCTGATTGGTCCGTTCTACAGGAAGCTGCATGCGGAGAGCAAAGGGAACAAGGAAATACTAGTGCTGGGCACGAGTGCCTTTGTGTTCCTGATGCTGACGGTGACAGAATTTATGGATGTGTCTATGGAGTTGGGATGCTTCCTGGCTGGAGCGCTGCTCTCATCGCAAGGTCACATGGTCACAGCTGAGGTCATGAGCTGCACTGAACCAATCAGAGACTTCCTGGCCATCATCTTCTTTGCATCTATTGGGCTGCACGTGTTCCCGACCTTCGTCCTGTACGAGCTGACCATCCTGCTGGTCCTGACCTTCTCGCTGGTCATTATGAAGTTCATCATGGCGGTGCTGGTTCTGTCCGCCATCCTTCCTCCGGGCTCGCGTCACATCCGCTGGCTGGTGTCGGCCGGACTGGCGCAGGTCAGCGAGTTCTCCTTCGTCCTGGGCAGTCGTGCTCGTCGGGCCGGCATCATCTCCAGAGAGGTGTATCTGCTGGTTCTCAGCGTCACGACTCTAAGCCTCCTCCTCGCTCCGGTGTTGTGGAGAGCCGCCACGCTCAAATGCATCCCGCGGGCCGAGAGGAAGCCGCTCACCTGAGTCTCTCCTGAGGAGACGCTCACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468771 lncRNA downstream 25077 6183135 ~ 6183535 (-) False G407975
TU468773 lncRNA downstream 25077 6183191 ~ 6183535 (-) True G407975
TU468770 lncRNA downstream 25111 6183135 ~ 6183501 (-) False G407975
TU468772 lncRNA downstream 25111 6183191 ~ 6183501 (-) False G407975
TU468766 lncRNA downstream 62688 6145497 ~ 6145924 (-) True G407971
TU468718 lncRNA upstream 6662 6220766 ~ 6222379 (-) True G407923
TU468734 lncRNA upstream 12308 6226412 ~ 6232275 (-) True G407939
TU468784 lncRNA upstream 175272 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 177940 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 203022 6417126 ~ 6432767 (-) True G408001
CI01000299_06197276_06199730.mRNA mRNA downstream 8882 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06185794_06195015.mRNA mRNA downstream 13597 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06145156_06154533.mRNA mRNA downstream 54079 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06130943_06144384.mRNA mRNA downstream 63744 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06037407_06054548.mRNA mRNA downstream 154064 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_06242885_06246604.mRNA mRNA upstream 27892 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 41753 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
CI01000299_06268189_06268676.mRNA mRNA upstream 54085 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
CI01000299_06274590_06278765.mRNA mRNA upstream 60323 6274427 ~ 6279132 (-) True CI01000299_06274590_06278765
CI01000299_06281861_06289368.mRNA mRNA upstream 65279 6279383 ~ 6290025 (-) True CI01000299_06281861_06289368
TU468578 other downstream 284479 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 372623 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 752504 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1279794 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1657891 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 317897 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000030 False 1998 mRNA 0.60 12 NC_007112.7 218524 ~ 225137 (+)
bowfin (Amia calva) AMCG00014439 True 4606 mRNA 0.43 14 CM030128.1 13882719 ~ 13903655 (+)