RNA id: CI01000299_06233485_06239858.mRNA


Basic Information

Item Value
RNA id CI01000299_06233485_06239858.mRNA
length 1908
RNA type mRNA
GC content 0.48
exon number 7
gene id CI01000299_06233485_06239858
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6232572 ~ 6239902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTATAAAGGATAACTGGCGAGTATTGTCATATTTTGGGCTTAAAGTAGTTAAAAAATTAAACTAAATAAGTACATAAATTACATTAAAATAAATAAATAAATTGAGTAAAATCATTAGTTTTTAAATAATTTTATTAATCTATTATATATTAATCTATTAGATAATTTAAATTAAAATATATAAATAATTTTGAATATAAATAAAAATAATTAAATAATACATTACTGTACATAATTATAGTGAATAGAAAAAAATATTTGGGGTCTGTGGCACCTGAAGGATCGAAAACTCCTGCTTAAACTAATACTTCCGTGGTCCATTTTTGTCAGTAAACTTGCAGTCACCTGATTTCCTGTTCATAAACTCCTGATTACAGTCAAACTCACACAAGAGTTTATTTTAGTCGCAGTTTGTTTAAAGTTCTGGTAAAAACACTGCGCGACGAAGAGGCGTAACCTTTGATCACAAATCCCGCCCCTCTGTTTGACTGACGTGCGAAAGATTGCGTGGCGAGGGGCGTGGTCTTCGCGCTCACAGCCCCGCCTCTTGGTTTGATTGACGTGTGCCCTTCTTCGGCTCCCCTGGAGAAATTAATCGTGTTGCTTGGCAAAGTGTTCGGAGTGAATGATGCGCGCGCCCGGCGTACAAACGCGCGCTTAAAACAACAACCACAAGAGTCGATTTGATAAAGTTCGAGTTCAGTCAGTGTGGATGTTATTATCGGCGCACGCGACAGGTTGATCCGGGATCTCTGTCTGTCCCGCGGGAGAGCAGAAGGGGCCATTACTGTTACTGTGGCGTGGGAAAAGTTTCACTTACGTGACGCGCGGCAGAGAGTCGGTCGCGTCCATGAGCGGCGCGGGACTGCTGTGAATGGAGTCCCGGAGTCCCGGAGCTCTGAGGACTGATCATGGAGCAGCGCAACGGGACGCGGAGCTCCAATCAGCCGCAGCTCCGCATTAACGTGCCGAGCACCGCCAGAGAGAGACTGGACAGTGTGGACCCGTACGGGTTCCAGCGCTCAGATGACTTTGACTACGAGTCGTACGAGGAGCTGATGTCCGAGTATCTGGCCGTTCTCACCAGAAGATCCATCAAATGGTCCAAACTGCTGCAGGGGAAGCGGCGCGTGGACCGGAACCTCAAGGATCTGCACAGAACCTTCCCAGACAACGTGAACTTCCGACGTTCGGCGGATCCGTGCCTGCAGGCGGCGCTGTATAATGTGCTGGTGGCGTACGGACAGCATGATAAAGCCGTGGGCTACTGTCAGGGAATGAACTTCATCGCAGGATATCTGATCATCATCAGTAAAGACGAGGAGACGTCCTTCTGGCTGATGGAGGCGCTGCTGGGAAGAATCCTGCCAGATTACTACTCTCCGGCCATGCTGGGTCTGAAGGCGGATCAGGAGGTTCTGGGCGAGCTGGTGCGGGCGAAGGTTCCCGCGGTGTGGCGGCTCATGCAGGATCACGGCGTCATGTGGACTCTGGTGGTCTCGCGCTGGTTCATCTGCCTCTTCATCGACGTCCTGCCAGTGGAGACGGTGCTGCGGATCTGGGACTGTCTGTTCTACGAGGGCTCCAAGATCCTGTTCCGCGTGGCTCTGACTCTGATCCGCCACCATCAGGACGTGATTCTGCAGGCGCAGAACCTGCCGGACATCTGCGAGCGCTTCAAACGCATCACCAGAGGCGCCTTCGTCGAGGACTGCCACGCTTTCATGCAGTCTGCAGATGCTCACTCAGTAGTGTGCACTAACAGACTCCATCATGAAGATGTGTATTTTCTTACGTTTGTAGAATGTGTGTATAGATGTAGAATAATCACAGATGCTGGACTGAAGATGTCTTTAGGTTGAACCACAATCATTTCTTCTTAGATTAAGACCAATAATACTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467072 lncRNA upstream 25528 6206834 ~ 6207044 (+) True G406478
TU466733 lncRNA upstream 34898 6189779 ~ 6197674 (+) True G406162
TU467064 lncRNA upstream 49041 6183194 ~ 6183531 (+) True G406470
TU467055 lncRNA upstream 81450 6149599 ~ 6151122 (+) True G406461
TU467057 lncRNA upstream 96451 6135889 ~ 6136121 (+) True G406463
TU466767 lncRNA downstream 25852 6265754 ~ 6266230 (+) True G406196
TU466709 lncRNA downstream 39517 6279419 ~ 6286426 (+) False G406142
TU466710 lncRNA downstream 39517 6279419 ~ 6286426 (+) True G406142
TU466743 lncRNA downstream 70506 6310408 ~ 6311699 (+) True G406172
TU467074 lncRNA downstream 83283 6323185 ~ 6323623 (+) True G406480
CI01000299_06223295_06227054.mRNA mRNA upstream 5386 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06217616_06220842.mRNA mRNA upstream 11501 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06177821_06180061.mRNA mRNA upstream 52381 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06116505_06128180.mRNA mRNA upstream 104122 6115638 ~ 6128450 (+) True CI01000299_06116505_06128180
CI01000299_06100005_06114087.mRNA mRNA upstream 118109 6099717 ~ 6114463 (+) True CI01000299_06100005_06114087
CI01000299_06269853_06274289.mRNA mRNA downstream 29700 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06312445_06318421.mRNA mRNA downstream 72138 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06322253_06326504.mRNA mRNA downstream 82351 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06396938_06400105.mRNA mRNA downstream 157036 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06416707_06422267.mRNA mRNA downstream 176805 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
TU466818 other upstream 858993 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1304728 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1527947 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1726655 4505404 ~ 4505917 (+) True G405866
TU466350 other upstream 1912431 4295533 ~ 4320141 (+) True G405842

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001448 False 1661 mRNA 0.54 8 NC_007112.7 184915 ~ 191971 (-)