RNA id: CI01000299_06257032_06266210.mRNA


Basic Information

Item Value
RNA id CI01000299_06257032_06266210.mRNA
length 2921
RNA type mRNA
GC content 0.51
exon number 15
gene id CI01000299_06257032_06266210
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6255857 ~ 6266210 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGTGGAGAATCTCTGCTCGTATAAAGTGTCGCCCATGCTGTACAAGCAGCTGCGTCAAGTGTGTGAAGATCACGTTCGGGCTCAGATCCATCAGTTCAGAGAATATCCTTCATCAATCATGATCCGCAGTATTTTCCTCTTCCTGGACCGGACGTACGTCCTCCAGAACTCGCTGCTGCCGTCCATCTGGGACACGGGGCTGGAGTTGTTCCGGACGCACATCGTGAGCGACAGCGGCGTTCAGAGCCGGACGGTGGAGGGAATCCTGGAGCAGATCGAGCGCGAGCGCAACGGAGAGACGGTGGACCGCAGTCTGCTGCGGAGCTTACTGGGCATGCTCTCAGACCTGCAGGTGTACAAGGACTCGTTCGAGCAGCGGTTTTTAACGGAGACGACCCGTCTGTACGCCGCCGAGGGTCAGAGGCTCATGCAGGAGAGAGAGGTTCCCGAGTATCTTCATCATGTGGCGCGGCGTCTGGAGGAAGAGAACGACCGCGTCATCAGTTATTTAGATCAGAGCACACAGAAGCCGCTCATCGCCGCTGTGGAGAAGCAGCTGCTGGGCGAACACATGACCGCCATTCTACAGAAAGGCCTGCAGACGCTGCTGGACGAGAACCGTGTGTGTGAGCTGACGCTGCTGTACGAGCTCTTCAGTAAAGTCAAGGGCGGCCTGACGGCGCTGCTGCAGTCCTGGAGAGACTACATCAAGAGCTCCGGCGGAGAGATCGTGAGTTCTCCAGAGAAGGATAAAGAGATGGTTCAGGAGCTGCTGGACTTCAAGGACAGGATGGACCACGTGAGCCAGCGCTGCTTCCAGAGGAACGAAACCTTCATCAATGCCATGAAGGAAGCCTTCGAGAACTTCATCAACAAGAGACCCAACAAACCCGCCGAGCTCATCGGGAAGGACGTGTTCGAGGCCTTCTATAAGAAGGATCTGGCCAAGCGTCTGCTGGTGGGCAAGAGCGCCTCGGTGGACGCAGAGAAGTCCATGCTGTCCAAACTCAAACACGAGTGTGGAGCAGCGTTCACCAGTAAACTAGAGGGGATGTTCAAAGACATGGAGCTGTCTAAGGACGTCATGATCCAGTTCAAACAGATGGTGAAGCTTCAGGAAGTGTTTAAGCTGTTCTATCTGGGGAAACACAGCGGACGTAAACTGCAGTGGCAGCCCACACTGGGTCACGCGGTGCTGAAGACTGAGTTTAAAGAGGGTAAGAAGGAGCTGCAGGTGTCTCTGTTTCAGACTCTCGTCCTGCTCATATTCAACGAGGCTGACGAGTGTTCGGTGGAAGAGATCCGCGCAGCCACAGGCATCGAGGACGGCGAGCTCAAGCGCACGCTTCAGTCTCTGGCCTGCGGGAAAGCGCGAGTCCTCAATAAAACGCCCCGTGGGAAAGACGTGGAGGACGCCGACCGCTTCCACTTCAACAGTGACTTCAGACACAAACTCTTCCGTATTAAGATCAACCAGATCCAGATGAAGGAGACGGTGGAGGAGCAGGTGAGCACCACCGAGCGAGTGTTTCAGGACCGACAGTATCAGATCGACGCGGCGGTGGTGAGGATCATGAAGATGAGGAAGACCCTGAGCCACAATCTGCTGGTGTCTGAACTCTACAACCAGCTCAAGTTCCCCGTCAAGCCGGCAGACCTGAAGAAGCGCATCGAGTCGCTCATCGACCGGGATTACATGGAGCGGGACAAAGAGAACGCCAACCAGTACCACTATGTGGCGTGAGCCGCTCGTTCTTCACCTCCTCACAAGGGCTTCTGGGCCGGACGGGTCCACGCTCGGCTCTCGGGGACAGACGGGACTTCAGCATGATTGCAAATGAGATGCACTTTCTTTTCTTTGTGTTTGTTGTTCTTGAACTTTCTGTTTAGCGCGTGTGTCGAGTTTCTTCTACTGTAGCGTCACGTTACGTGTGTTTCTCTCTGGCTTCGGTCCTCATGATGACGGAATCATGTTGATGTGAGTTCTGATGCTGCAGGGTTTGTCATGTACCCGCTCAGGCAACGGAAACCAGACAGGATTTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGCTGAGACTCAATGCAGCCTCAAACTCGTTGTAATGGACAGAAATTATTCTTTTGATAACATGTGAGTGTATGTTTGTATTTGTGTGTGTGTGTGTGTGTATTTGTATTTGTGTGTCAGAGTGTGTGTTTATATTTGTGTGTGTTTGCGAGTGTGTATGTGAGAGTGTTTGTATTTGTGTCTGAGAGTGTGTTTGTATTTGTGAGTGTTTGCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGTGTGTGTTTGTATTTGTGTCTGAGAGTGTGTGTTTGTATTTGTGAGTGTGAGTGAGATTGAGTGAGTGTGTCTATATGTTTGCGTGTGTCTGTGTGTGTGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTTTGTATGTGTGTGTGTCTGAGTGTGTGTGTCTGTGTCTGTATGTGTGTTTGCGTCTGTGTCTGTGAGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGTTTGCGTCTGTGTCTGTGAGTGTGTGTTTGTGTGTGAGTGTGTGTTTGTGAGTGTGTGTGTGTCTCATCAACTGTATTCTGTCACATACACAGTTTTGTAGAGCAGAGGATTCTATTCTTTGTAAGCGGGCAAAGATATGAAAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468734 lncRNA downstream 23582 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 33478 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 72322 6183135 ~ 6183535 (-) False G407975
TU468784 lncRNA upstream 123166 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 125834 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 150916 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 173311 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 174037 6440247 ~ 6440470 (-) True G408010
CI01000299_06242885_06246604.mRNA mRNA downstream 9253 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06208641_06214104.mRNA mRNA downstream 41753 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06197276_06199730.mRNA mRNA downstream 56127 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06185794_06195015.mRNA mRNA downstream 60842 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06145156_06154533.mRNA mRNA downstream 101324 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06268189_06268676.mRNA mRNA upstream 1979 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
CI01000299_06274590_06278765.mRNA mRNA upstream 8217 6274427 ~ 6279132 (-) True CI01000299_06274590_06278765
CI01000299_06281861_06289368.mRNA mRNA upstream 13173 6279383 ~ 6290025 (-) True CI01000299_06281861_06289368
CI01000299_06291499_06294321.mRNA mRNA upstream 24339 6290549 ~ 6294875 (-) True CI01000299_06291499_06294321
CI01000299_06295715_06298755.mRNA mRNA upstream 29403 6295613 ~ 6298775 (-) True CI01000299_06295715_06298755
TU468578 other downstream 331724 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 419868 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 799749 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1327039 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1705136 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 265791 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000027 True 1905 mRNA 0.54 18 NC_007112.7 158034 ~ 167398 (+)
bowfin (Amia calva) AMCG00014425 True 7870 mRNA 0.39 20 CM030128.1 13791149 ~ 13813879 (+)