RNA id: CI01000299_06281861_06289368.mRNA


Basic Information

Item Value
RNA id CI01000299_06281861_06289368.mRNA
length 4656
RNA type mRNA
GC content 0.26
exon number 8
gene id CI01000299_06281861_06289368
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6279383 ~ 6290025 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACGGAACCCTTAAAGATGAATCACTTGTTGTTTGGATAAAAGCATCTGCTAAAAGAATAAATGTAAATAATCATGGACATTATTGAGACATTAAACTAGTCATGAAAGTGAAACGCTTCTCAAACAAGAACAAATGTAGTGCGGGGCTTGATTTTGTCTGTGGGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCGCCCTCATCATCAGAGAAGTCACTGCAAAAGGGAGAAGTTATTCTGATTCAAAATTACGAGGAACATGAATTTAAAACAATAATGATGTGCACCGATGAATCATTAAGAATAAACACTGCAATATTTGTTCACTTTTGATTTGTATCTTTTGCACTATATTCACATTTTCTAAAGTTTTGTGTGAGAAACAGCCAAAGTTATTCCCTCATAATCCTCCGCTTGGCTGCGGTTCTTCAATCTCATTTGTGTGGAGAACATGAAACTGAAATCTCACATGTCGTAAGTGTAAACGGCACTACATTTGTCCTGCGGTGAGTTTCTCCTCCCCCTGTTCCTCTGGCTCTCTCTCCCTCCCAGCGCTCAGTTCATTGACCTTCTGTTTTCTGAACGATCCTCAAACGTGAAAGAGCTCAACGCTGACAAGCGAATATGTCTTGGGTCTTCTGGAACTTTCTGTGCTTGTTTCTAATACACTGTGTTTGCTCAGAAGTCTTCCTCCACACTCGAGATGCCAGTCAGATCCTGAGCCGCCGCCGCCGCGCAAACCAGGTGTTCGAGGAGTGGAAGCAGGGAAACATGGAGCGCGAGTGCATTGAGGAGCGCTGCAGTTACGAGGAGGCCAGAGAAATCTTCGAGGATGTTACAAAGACGGATGAGTTCTGGCACGTGTATATCGATGGAGACGCGTGTTTGTCACAGCCGTGTCTCAATGGTGGCAAGTGTAAAGATGCGATCGGGCCGTACACGTGTTTCTGTCAACAAGGGTTTAGGGGCTACAACTGTGAGATTGCTATTCCTCAGCTCTGTGAGAGTGAAAATGGGGGCTGTGATCATTTCTGCAGAGTGAAGGAGAAAGACGTCGTCTGTTCGTGTGCCAAAGGCTACGAGCTGGCCGATGATGGGAAGTCATGTCACTCTAATGAACCTTTCAAATGTGGCGTCATTCATCCTCCGAAGACCAGAAGAATCTTCATACACATGCCAAACATCACCAACAGTGAGACTGAAGAGGAGACTCACATTGAGACCACCGTCGAGTCTTTCATAGACGCCACAAACTCATCGGCCAATGAGACGAGCAGCATGTTCGGCCTCCACGAGCAGGACATCGCTAAAAAAGAGCAAGAGGAACCGATTTTACCTGAAACATCTGGAGGAATCACAAGAATCGTCAATGGTGTGGAATGTCCTCCTGGAGATTGTCCATGGCAGGCTCTTCTCATTAATGAAGACAACATCGGCTTCTGTGGCGGCACCATCCTGAACCAGTACTTCATCCTGTCGGCCGCTCACTGTATGAATCAGTCGCTCTACACCAGGGTGGTCTTAGGTGAGTTTGACACGCTGGTCAACGAGGGTCGTGAGGTCACCCACGACGTAGATGAGATTCTGATTCACAAGAAGTATATGGCGGACACCTACAACAACGATATCGCCCTCATTAAGCTCAGCAAGCCCATCACATTCACCAGATTCATCCTCCCCGCCTGCCTGCCGGAGAACGACTTCGCCGAGCGTGTGCTGATGCGTCAGGAGGAAGGTATGGTGAGCGGCTTCGGCCGTGTGCGCGAAGGCGGCCTTCAGTCCACCATCCTCCAGAAGCTAACGGTGCCGTACATCGACCGTGGCAAGTGCATAGAGTCCAGCAATTTCCAAATCTCCAATCACATGTTCTGTGCCGGATATGACCAGGAGGAAAAAGATGCGTGTCAGGGCGACAGCGGCGGGCCGCATGTGACGCGCTACAAAAACACGTGGTTTGTCACGGGCGTGGTGAGCTGGGGCGAGGGATGCGCCCGGAAGGGCAAGTACGGCGTCTACACGCAGGTCTCCAAGTACATCCGGTGGATCCAGAACGCCATGGCCAAAGTCATGCCAGAGATGAGAAATTCTATAAAAGCCAAAGCAAAGCGAGAGGTGCTTCAGAAGACGCCTGTACGAAGAGTCTGACAGGAAGTCAACGTGACTCAACAACGACACGCTCTTAATTCATGTTGATGATTTATCAGTGATGTTACCCCAGCAATCAAAAATATATTCTAAGAACCCATAAAGTTATAAGAACGTTATTTCTGAATGATCCCTGAACGTCCAGTTTTTTGGCTATGCAAATGTTAAGGGAACATTCCATTTTACAATTCTGGAAACATTCTGGGAACGTTACTTTTGAATGTTCCATGAATGTTCTGAAACAACTAGTAACATTTAGAAAGTGTTCCATGAACAATAAATAATGTTTTTGTGTTAACGTTTTGAGAACATTATTAAAGACCAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAACAACTAGTAACATTTAGAAAGTGTTCCATGAACAATAAATAATGTTTTTGTGTTAACGTTTTGAGAACATTATTAAAGACCAGATAACTCTGAACAAAAGTTTGTTCATGACTTTGAGAAAACCTTGCCAGAACGTTCTAACTTTCATCCTAATGACATTTACAGTTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468734 lncRNA downstream 47108 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 57004 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 95848 6183135 ~ 6183535 (-) False G407975
TU468784 lncRNA upstream 99351 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 102019 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 127101 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 149496 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 150222 6440247 ~ 6440470 (-) True G408010
CI01000299_06274590_06278765.mRNA mRNA downstream 251 6274427 ~ 6279132 (-) True CI01000299_06274590_06278765
CI01000299_06268189_06268676.mRNA mRNA downstream 9988 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
CI01000299_06257032_06266210.mRNA mRNA downstream 13173 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
CI01000299_06242885_06246604.mRNA mRNA downstream 32779 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06208641_06214104.mRNA mRNA downstream 65279 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06291499_06294321.mRNA mRNA upstream 524 6290549 ~ 6294875 (-) True CI01000299_06291499_06294321
CI01000299_06295715_06298755.mRNA mRNA upstream 5588 6295613 ~ 6298775 (-) True CI01000299_06295715_06298755
CI01000299_06299968_06305021.mRNA mRNA upstream 8871 6298896 ~ 6305158 (-) True CI01000299_06299968_06305021
CI01000299_06306931_06307410.mRNA mRNA upstream 16075 6306100 ~ 6307410 (-) True CI01000299_06306931_06307410
CI01000299_06310939_06311125.mRNA mRNA upstream 20914 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
TU468578 other downstream 355250 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 443394 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 823275 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1350565 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1728662 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 241976 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000024 True 2727 mRNA 0.46 8 NC_007112.7 135903 ~ 142469 (+)