RNA id: CI01000299_06299968_06305021.mRNA


Basic Information

Item Value
RNA id CI01000299_06299968_06305021.mRNA
length 2505
RNA type mRNA
GC content 0.47
exon number 8
gene id CI01000299_06299968_06305021
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6298896 ~ 6305158 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATCATTACTGACTGCATCAGTGGCTCCACCTGCTGGTGACACACAGAACAGCTTCAGTCACAGGATTGTGCAATGATCTTCTGTCCGACGCCTACGAGTGTCCAGACCAGACTTTGATCCTGAAGCTAAAACATCATGGAGTTCAAGCTGAACAGAATGAAGCTCTGCCACATGATCCTGATGCTGCTCGCCGTCCCAGAGTGCTTTGGGCTTCAGTCAGTGTTCCTCAGTAAGTCTGAGGCCAGCCGGCCGTTATCTCATCGTGTCAGGCGGGCCAACTACTTCCTGGAGGAGCTGAAGCTGGGAGATCTGGAGCGAGAGTGTCTGGAGGAGATCTGCTCGTATGAGGAGGCCAGAGAGATCTTCACCATCCCCAAACAACTGGAGGAATTCTGGAAGAGATACACAGCGGTGGATTTCTGTCAGTCGGGACCGTGTCAGAACGGAGCCACATGTGTGGATCAGATGGACACCTACATCTGCATCTGTCCAGTGAACTTCGAGGGGCGACACTGTGACAAAGAAATATTACCACACAGTTCCTACGGATGTCTGTACAGGAACGGCAACTGCGAACACTTCTGTGTGGAGATCACCAATTCGACTCATCGCTGTGATTGTGCTCCCGGATACACACTGCACACAGACAACAGCAGCTGTGTGCCGCAGGGTGGTTTCCCGTGTGGCAGGCTGGTGGAGAAGGGTGTGGGTCCGAGGATAGTGAAGGGCGACGTGTGTCCTAAAGGACAGTGTCCGTGGCAGGCTTTACTCAAGTATGCTGGAGTGTATAAATGCGGTGGTGTTATTCTAAATTTCCAATGGATTCTCACCGCGGCTCATTGTGTCTGGAATAAAGATCCATCCCTCTTACAAGTGACAGTCGGTGAACACATCCTCGATAAAGACGAAGGAACAGAGCAGATGAGGGAAGTGTCTAAAGTGTTCATCCACCCGCGGTACAACCACTCCAGCACGGACAGTGACATCGCACTGCTGCGTCTCCTCAGCCCCGTCACGCTCGACCGCTTCGCCATTCCCGCCTGCCTTCCTCCTGCTAACGGCACGTTCGGACGCACCATAGGAGCCATCCGCATGTCCACTGTCAGCGGGTGGGGTCGCATGGCGCAGTCGGGACCGCCGTCTCTGGTTCTCCAGAAGCTGGAGGTGCCGAGGGTCTCCTTAGAGGAGTGTCGGGAGAACTCGGGTCTGAAGGTGACCAGGAACATGCTGTGCGCCGGCTTCATCGAGGGCGGCCGTGACTCCTGTCAGGGGGACAGCGGAGGGCCGCTGGTCACCCGCTACAGAAACACATGGTTTCTGACAGGAATCGTGAGCTGGGGGAAAGGCTGCGCACGCGCCAACGTCTACGGCATCTACACGCGGGTGTCCGTCTTTGTGGAGTGGATTCTGAAGACTATGGCCAGCGTATGAATACAAGAGTTTCTGAATGTTATGTAAGGTGAAGTGTGTTCAGATTTTCACAGTCACTGAAGTCAGTCATGAGCTATGTTTCCATTGACCAGTTTTTATGTGAATTTTGGGATATTGCATGTAAAATTGTTGGATGGAAACGCCAAGATGCACATGAATTCTAAAAAAAGTACGAGCTCAATTGAGGCAGATCATTTTTTTAATCCGATAAGAAGACATGCACATAAATTACGATAGTTTTATAGAATAAATCCCTCAATGCACAACAAAAATTCATGGTGCAAAATATAAAACTCTAAACTGGCTTTTTTTCCCGCATCATAAATGAGTTTGTCTCAGAGCGTCAGACGAAACACAATAAACGCTGTCATGTTCTCTTTCGTTTGGAAGTGGATGCCTGATGATGCGTAAAAATTCTAAAAATGTGCATAAAAAATACACCCAATTAAGGCAGATAATTTTTTATCCAATAAGAAGACGTGCATAAACTACGTTGGAAACACATTTACTGAATAATCCTTTGATGCACAACAAAACGCTCGTGTGACTCTGTGATTGGATAACTGGACTAACCAGCGGACCAATCGCATCGCAGCATCTCAAATGTTGGTTTGGTGGTTCTGAAACGTCTGAGTCAAAGTCTGTCATCAGAATGATTTGGTTTAATTCCCTCCAGAAGCGTCTCACACGATTGTGTTCCCGAACACCAGCATCCGAACGCAAGATCACATGACAGTTTTTGTGTTTCGTCTGACGCTCTGAGACAAACTCATTTATGATGGAGGAAAAAGAGCCACTTCAATTTTTATTACTGATATTTTGTGCCAGTTTCCCAGAAAGTGATAATTTTGTTCTATTGTATGGATGGAAACGCTGCTTTATTTGGAAATGTTTTATGTGATATTCCAATTTTGTGCTCAAGTTAAATTTGCAACTTCCCGAAGAGTGACGCTTCCACAACACTGAACACTGGCAAACACCAGAACATGTACTTTTGCAATTAAAAAAAATGGCACACTTGTGAGTATATATAATAATCAATGGCAGAACATGGTTATATATGAAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468734 lncRNA downstream 66621 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 76517 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 115361 6183135 ~ 6183535 (-) False G407975
TU468784 lncRNA upstream 84218 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 86886 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 111968 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 134363 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 135089 6440247 ~ 6440470 (-) True G408010
CI01000299_06295715_06298755.mRNA mRNA downstream 121 6295613 ~ 6298775 (-) True CI01000299_06295715_06298755
CI01000299_06291499_06294321.mRNA mRNA downstream 4021 6290549 ~ 6294875 (-) True CI01000299_06291499_06294321
CI01000299_06281861_06289368.mRNA mRNA downstream 8871 6279383 ~ 6290025 (-) True CI01000299_06281861_06289368
CI01000299_06274590_06278765.mRNA mRNA downstream 19764 6274427 ~ 6279132 (-) True CI01000299_06274590_06278765
CI01000299_06268189_06268676.mRNA mRNA downstream 29501 6268189 ~ 6269395 (-) True CI01000299_06268189_06268676
CI01000299_06306931_06307410.mRNA mRNA upstream 942 6306100 ~ 6307410 (-) True CI01000299_06306931_06307410
CI01000299_06310939_06311125.mRNA mRNA upstream 5781 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06320613_06321046.mRNA mRNA upstream 15406 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06337727_06341840.mRNA mRNA upstream 31981 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06352251_06359190.mRNA mRNA upstream 46277 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
TU468578 other downstream 374763 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 462907 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 842788 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1370078 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1748175 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 226843 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000018 True 2870 mRNA 0.51 8 NC_007112.7 109798 ~ 119146 (+)