RNA id: CI01000299_06312445_06318421.mRNA


Basic Information

Item Value
RNA id CI01000299_06312445_06318421.mRNA
length 2226
RNA type mRNA
GC content 0.54
exon number 11
gene id CI01000299_06312445_06318421
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6312040 ~ 6318421 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAAAGCCTTTAGTTCAATAATTTTGTCCGGTGAGGTTATAAAGTTTGCATCAAATGTCGTGCTGTTGAAGTTTCTCTCTGTGATTCACCAGAGCTTCGGTTTGACTGAATCGGTTTGAAGAATCAAATCACATGTGGATGATTCTTCAGTGATGCCGCGTTGTTTCATTCACTTTAATGAAGTCGTTTAAGTAAGAAATGTGATATTTTCATTCAGTTTTCATAAGCGTTTTAGCATTTCAGTGATGTTTATTGTCTTTGGCACATAAAGTTTTATTACTAATCAGCGTCTTCGTGAGATAATAGAATAGTTGAGTTATTGACATGTCAGATCTATTCAAATGTTTCTTGTTTGTGTCTCGATCTCTTCTCAGCTCATCTGAGGATCTGAACTGATCGAGATGATGATGGAGTGTGAAATCGAGCGAGCGAAGATCTTCTGGGAGGAAGTGGATGTTGATGGAGAGTTTGATGAGCTGATGGAGGTTCTTTCACGTTTAAGAGATGCGATCAGACACAACACTGCGACAGACAGAGAGTATGTTCATGCCATGAAGATCATTCTGGAGTCTAAACTGGTCGTCCTCAGGAACGAAGCCTTCGAAGAGGTGCTGATCGATGAAGATATTCTGACCGTGACCGTGTCAGAGTCTCAGTGTTCTCCCGAGAGTTTGAGGAACGGCGTGGAGACGGAGGACGTCCTGCAGAAAGACAGCTCACGAGACGTGGAGTCGAGCTCAGACTACAGTCAGATGTCTTCAGCCAGCAGAAACGACGGCGTGAGTGGTCAGGATCCGACGCTGCTTCTGTCTCCTCTGAGCTTCTGTTCTGAAGAGCCGAGGTCTCCCGTCCCGCTCGTCTACCAGCCGCACGACTGCAGCCCGGCGTGTGTCCCGCAGCTGCCCGCTCACGCCGACCGCTTCCTGGGCCACAACCCGCTGCGAGTGCCCATGCTGTGCCAGTTCCAGCGCCACTGCGTTCGGGTTCGAGCCGCCAGTGGCGAGCAGGAGGACGAGTGTGACGCGCAGGACGTGATTTACAAAGCGCCGTGTGGGCGGGGCCTGCGCTCCATGGAGGAGGTGCTTCAGTTCCTGCTGCAGTCGGACACTCTGGGCGTGTTGCAGCCGAACAATTTCAGCTTCAATTCGCAGGTTTTTCCGGAACATCCGGCACGAGCTCCCGCCTCGTCTGCGCTTCTGTTCGAGCGAGACCTCAGCCACGGGATCGAGCCGGTTCCCGTGCCGCTGTTCAATGAGGTGGACGGGACACGCCTGAAAGAGTTTCGCTACCGCAAAGAGCGCTGGCCGCACGGCTGCTTCCTCAGCGCAGCGCCGTTTTTCACAGCGTGCTGCGACTGCGAGGACGGCTGCGCAGATGATCAGAGCTGCGCTTGTGTTCAGCTGACGGTCAGAGCCGGAGGACACGGTCATGCTTACAGACACCAGCGACTGAGCGAGCCCCTGAGTGCAGGGTTGTTCGAGTGCGGCCCGTGGTGCAGCTGTAAAAAGAGCCTCTGTCAGAACCGTGTGGTGCAGAAGGGGCTGCGGGTGCGGCTGCAGGTGTTTCGTACGCTGGACCGCGGCTGGGCCGTACGCTGCTCTGACGACCTCGACAAGGGAACCTTCATCTGCATCTATGCAGGCGTCGTCCTCAGACTGGAGCAGAGCGCGGAGGAGCCGCCGGATCTCCGCAGCAGAGAGGCGCCCGTGTCCGACGATGAGGTGGAGGTGGTGGAGGAGTGGACGCTTCCCACAGGCCCTAAGGAGACGGTCCCTGAGATGCTGGACTGCTCTCCTCCGCTGTATGTTCCTGTGATCCAGAGACCTGCGGATCAGAGTCCAGGCGCTCCGCTCACGGACCAGCAGCAGTCACAGGACTGCAGTGAGACAGAGCATGAGAAGTGCGAGGAGGTGTTGAGTAAGAAGCCCAGATTAGCACTCACCGGATCGAACGGACACAACGACAGAGCTGACATCACGTCACACATGCATCAGAGACTCAAACAAGACAAAATGTATTACCTGGACGCCTCTAAAGAAGGAAACGTGGCCCGATTCATCAACCACAGCTGTGAGCCGAACCTCTTCATCCAGAACGTCTTCGTCGACACACACGACCCACAATTCCCTCTCATCGCCTTCTTTACAAACAGGTCAGTTAAAGCTGGAACTGAACTGACCTGGAACTACTCGTACACACCGGGCAGTGACCCGGATCACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466743 lncRNA upstream 341 6310408 ~ 6311699 (+) True G406172
TU466709 lncRNA upstream 25614 6279419 ~ 6286426 (+) False G406142
TU466710 lncRNA upstream 25614 6279419 ~ 6286426 (+) True G406142
TU466767 lncRNA upstream 45810 6265754 ~ 6266230 (+) True G406196
TU467072 lncRNA upstream 104996 6206834 ~ 6207044 (+) True G406478
TU467074 lncRNA downstream 4764 6323185 ~ 6323623 (+) True G406480
TU467088 lncRNA downstream 73659 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA downstream 73727 6392148 ~ 6392356 (+) True G406494
TU467131 lncRNA downstream 222841 6546125 ~ 6546203 (+) True G406532
TU467132 lncRNA downstream 222841 6541262 ~ 6541985 (+) False CI01000299_06541306_06541820
CI01000299_06269853_06274289.mRNA mRNA upstream 37647 6269602 ~ 6274393 (+) True CI01000299_06269853_06274289
CI01000299_06233485_06239858.mRNA mRNA upstream 72138 6232572 ~ 6239902 (+) True CI01000299_06233485_06239858
CI01000299_06223295_06227054.mRNA mRNA upstream 84854 6222892 ~ 6227186 (+) True CI01000299_06223295_06227054
CI01000299_06217616_06220842.mRNA mRNA upstream 90969 6217616 ~ 6221071 (+) True CI01000299_06217616_06220842
CI01000299_06177821_06180061.mRNA mRNA upstream 131849 6177821 ~ 6180191 (+) True CI01000299_06177821_06180061
CI01000299_06322253_06326504.mRNA mRNA downstream 3832 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06396938_06400105.mRNA mRNA downstream 78517 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06416707_06422267.mRNA mRNA downstream 98286 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06424909_06425694.mRNA mRNA downstream 106390 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
CI01000299_06430810_06434834.mRNA mRNA downstream 109630 6428051 ~ 6435178 (+) True CI01000299_06430810_06434834
TU466732 other upstream 11532 6237838 ~ 6300508 (+) True G406161
TU466818 other upstream 938461 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1384196 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1607415 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1806123 4505404 ~ 4505917 (+) True G405866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00076190 True 1641 mRNA 0.55 13 NW_003334027.1 8780 ~ 12431 (+)