RNA id: CI01000299_06337727_06341840.mRNA


Basic Information

Item Value
RNA id CI01000299_06337727_06341840.mRNA
length 2244
RNA type mRNA
GC content 0.55
exon number 11
gene id CI01000299_06337727_06341840
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6337139 ~ 6341840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAGTTTGACTCCAGCGCAGCTGTTGCTGCAGCAGACGCAGGCGCAGCTCATCGCAGCCGTGCAGCAGTCGGCAGGTCAACAGAGCAGCACCACTGGAGCCAATATCTCCGCCTCCGCGGCCACGCCCATCACTCTGTCCCAGCCCATCCAGATCGCATCTCCGGGTCACTCCATCAGCCCTCAGATTCAGCCCCAGTTCATCATCTCTCCGTCTCCTCAGGGTCAGACCGGTCTCTTGCAAGCTCAGAATATCCTGACTCAACTACCTCAAAGCCAAGCCAGCCTCCTGCCCGCTCAGACCAGCATCGCTCTCACCACACAGGCGGCCACACCGACGAGGAAGATCGCGGCCATGCCGTCTCCCGCGGCTCCCACTCTGAAGCGCGTGGACGGCCCGTGTGTGGAGGAGGCCAGCGACCTGGAGGAGCTCGAGCAGTTCGCAAAGAACTTCAAGCAGAGACGCATCAAGCTGGGCTTCACTCAGGGTGACGTGGGGTTAGCGATGGGGAAACTCTACGGCAACGACTTCAGCCAGACCACCATCTCCAGATTCGAGGCCTTGAACCTGAGCTTCAAGAACATGTGCAAACTCAAACCACTGCTGGAGAAATGGCTCAACGACGCAGAGAACATGTCAGCTGACTGCGTGGTGTCGAGTGCGAGCGAGATGTCTCCGGGTCTCTGCGAGAGTCTGAACCGGCGGCGTAAGAAGCGGACCAGCATCGAGACCACCATCCGTCTGGCATTAGAGAGGAGCTTCCTGGAGCAGAGTCAGAAGCCGTCATCGGAGGAGATCACAGTGATTGCGGATCAGCTCAACATGGAGAAGGAGGTGGTGCGAGTTTGGTTCTGTAACCGCAGACAGAAGGAGAAGAGGATCAATCCTCCCAGCAGCTGCAGCGGATCGTCCGCGTCAGCCATCAAAGCCATCTACAGCACCTCCAACACTGCAGTGTCCAGCGGCACAAACACACTGACGGTGAATTCTGTAGTTCCACTGAGCGCCAGCAGCATCTCAAACCTCACGCTCGGTGGCGCTCTGGCTCAGGTGACGTCACACACTCCGTCGGTCATCTCCATGGCACCAGCCATCGCTACGCCCGCCCCCACTGTGACATCACCATCACTGACCACGTCCGTTACTGCTGTGAAACAAGAGTTGAGCGCAGTTTCCTCGGCAACCACGGTCACGCAGGGGGCGGGGCAGTTGCTGGTGACGGGCACAGGACTGGGCGGAGCTAATCTGACTGCTGTTACTGGGGGTTTGAACCCAACGATCATAACGCCCTCGCAGCTGACGCAAGGTGGGACGCTGCTGAGTTTGACTCCTGCTCTGGGAAACACGTTGATGAACAACAACACACTGGCCACCATCCAGGCAGCTCTTGCGTCGGGCGGCGCTCTGCCTCTGACGTCCATCGACGGAAACACCGGCCTGCTGTTCGCCAACACCAGCGCAGGAAACCCCGCCTCCGGCCTGATGACCACGCCCTTCTTCCTCAACCCGTCCGGCTTCTCTCTGCTGCCCGCCAATCTCCTGTCAGCGGGCGGGGCTGGAGGCGGAGCTCTCAACCTGCATGTGACCAGCGATGTGCAGCAGAGTCCTGTTGCCACGACGACGAAGAACGTGGCCTTGGCCTCGAAGGCTCAGTGAGCGCGTTCGGCTGCGATTAATCCTGTTGCTATTACCAAAAACACTTCTGACCGGTGTAGTGAGCGCAGGACTGACGAGCGACCGCCGGGTTTGTTGTATGATGCCACGCGCTCTTGGACACGGTCAGGATGGAACTTTATTTTTGCATTATTTCTCAAACTAACGTCTAAATTAACCAAAAATGTGAGACTTTTTCATGACGGCAGATTCTTCACGAGAGATTATTTCACGTAACAGAGTTTATATTGACTTTCTATGAGGGGTTCTGTTGTTTTTATTTGCGGCTCTGTGAAACGGGCCGATTGTAGATTTATAACCAAAAGCATTTCAGATGTTTTATGTTGCGAGTTACTGCAGCGCGTCGGTGGAGGTTCTACCCGATGACTTTTTAAACTAGTACTCTAACTCGACATCACTTTATAAATACGGTTAGAAGGCTTTAAACTAGTAATAATCCGTCACAGTGAGCGCGTCTCCTGTGAGAAATGCAATCTGTCACACGTTTGTCTGAACACTGATTGTGTTTGTAGTGTTGATGTGAGTCAGCGGCGGCAGAGAGACGAGTTCATTCAGCATGAATCTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468734 lncRNA downstream 104864 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 114760 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 153604 6183135 ~ 6183535 (-) False G407975
TU468784 lncRNA upstream 47536 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 50204 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 75286 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 97681 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 98407 6440247 ~ 6440470 (-) True G408010
CI01000299_06320613_06321046.mRNA mRNA downstream 16093 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 25910 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06306931_06307410.mRNA mRNA downstream 29729 6306100 ~ 6307410 (-) True CI01000299_06306931_06307410
CI01000299_06299968_06305021.mRNA mRNA downstream 31981 6298896 ~ 6305158 (-) True CI01000299_06299968_06305021
CI01000299_06295715_06298755.mRNA mRNA downstream 38364 6295613 ~ 6298775 (-) True CI01000299_06295715_06298755
CI01000299_06352251_06359190.mRNA mRNA upstream 9595 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06362136_06376918.mRNA mRNA upstream 20164 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06476844_06477950.mRNA mRNA upstream 134143 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06497414_06502931.mRNA mRNA upstream 155316 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 163717 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
TU468578 other downstream 413006 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 501150 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 881031 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1408321 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1786418 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 190161 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00076248 False 1093 mRNA 0.60 5 NW_018394426.1 20255 ~ 22887 (+)