RNA id: CI01000299_06362136_06376918.mRNA


Basic Information

Item Value
RNA id CI01000299_06362136_06376918.mRNA
length 2024
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000299_06362136_06376918
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6362004 ~ 6377235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGTCTGCTGGTGGTTTACTTTGATTCAGGGCAAACGGTTTTGTCTGCAGAAATGATGCTGTCTGTGTGTGTAAATGCGATGTGTTTGTTTTTGTCATCTTGACCCACAGCAAACAAAAGCAGCTTATTTAGCAGCTAATTAACTGAGAGCTGGACTCTAGACGCCCATCTGGCCTTTGGTGGCGGCTGAAGTGACCTAATAAGGAACGTCTCCGAGCGCGTGTGGCCCGATCTGGCCGTCTGACCCTGTTCCAGCTCAGATTAGTGCCAGAAACCGCAGAGAGTCATTCGTAATCTTCATTCTTCATGGACAAGATGGGATGGAAATCTTTGAATTATAAAAGTAATTATTCTGTTTTAATTGCATTGACAGCTCGTGATTATGGGCCGATACTGAATCCTGTCGTGCTCTGGTGCGACAGACGCGTGATGCTGTACTTTCTGCTGCTGACGCTGCACTGGACGACGGTCACTGCGGCACTGCATCCGTCCACACGCGCCGCTGCCGCTGCCGCCGCCCTGCAGGAGGATGGATCAAGGCCGTATATTTACCACTGCCGATCGCCCAACATGGAGGTCTTCACCTGCTGGTGGCGTCCGATCAATAATCAGGACAACATTACCTACACGCTTCAGTACAGCACGGGGACTGGCGCTTCTCAGGACTGTCCCGATTACGTGAGCGGCGGCATCAACAGCTGCTTCTTCGACACCAAACACACTCAGGTCTGGGAGATGTACTGCATGAAAGTGACGGCCCACACTGGCACAGGGTCGCTGACCTCACAGAGACACTGCCTGGACGTGGCTGATATAGTGGAGACCGACCCGCCATTTAACCTGTCCTACATCATGCTGAACGAGAGCCACTGTGGATCCTGTCGCTCCATCATGCTGTCCTGGATGTATCCGGTCGAGTCTCAGGTGCGGGAGGGATGGATTACGCTCGTCTACGAGCTGCGCTACAGAAACCTCGCTCAGCCAGACACCTGGAAGATGAAGGAGCGTTTGCGGGAGCCTCATGTTGAGTTGTTGGATCTGCCGGTGGGAACGTATGAGTTCATGGTCCGGTGCCGCTCCGCCAACAGCAAACACTGGAGCGCATGGAGCGAGTCCATCAGCATCAGCATCATCGGCAGACCTCTGTCCGATCGCATGTTGGCCTTCATCCTGGTGACCAGCCTCAGCATCGTGGCCTTCCTCATCGTCGGTTTTGGGTTCATTCCACGAGGAAAGAGAATCAAAGCGTTTCTCCTGCCACCGATTCCCAAACCGCGCATCCGAGGGCTCGAACCCGTTCTGCTGAAGAATGGCAAGATCGATGAGATCAATCGTCATTTCTCCAGTTTTCACGGCTATAAGCCGCCGCAGTACTCTATGGAGACTTGGTACCAGGTCAGCGTGGACGCGTGTCCAGCTGTGGCGTCTAAAGAAGAGAACGCAGCTGTCGCTCAGTACGTCTCCGGCCCTGAAGGACAGCCGACCCCTCAGACGAGCTGCAGTCCTGCACCTTACTGCCGCAGCGGCCCCGCCTCCTACTGCGAGGGAGCCACACCTCCTCCAGCCCCTGGCCACACCCAACTGGAGCTCGTATCTGTCCCAGGCATGGACTACAGCATGATTCTAAACTCCGCCCCCGCGCAGCCGCCGTCGCAGGACTTCTACACGTGTGTCACCGGCGTGACGGCCAGCGGGGCGCTGCATCTGGTGCCCTGCCTGCCCGACATGCTGAAAAACACGCCCTATGTGCAGTTCAAAGAGGGCGCGGACGGCAGTGCGGACAAGAGCGGCCAATTGGCGGCGCTGCTGGAGAAGCAGATGGAGGAGCTGTCCTGCGACTCTGACCCGAGCGAAGCTGCCGTGCCTTTGCTACCTCATTCATCAGACTGAGCCTAAATCAGCGAACGCTCAGGACCTGCAGCAGCATAACGGACATGCGACGTACAATCACACACACACACACACACACACGGTCCACTACTGACACAGTCTGTGCGGGTTTGTCTTGAAATACAGAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468734 lncRNA downstream 129729 6226412 ~ 6232275 (-) True G407939
TU468718 lncRNA downstream 139625 6220766 ~ 6222379 (-) True G407923
TU468771 lncRNA downstream 178469 6183135 ~ 6183535 (-) False G407975
TU468784 lncRNA upstream 12141 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 14809 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 39891 6417126 ~ 6432767 (-) True G408001
TU468808 lncRNA upstream 62286 6439521 ~ 6439736 (-) True G408009
TU468809 lncRNA upstream 63012 6440247 ~ 6440470 (-) True G408010
CI01000299_06352251_06359190.mRNA mRNA downstream 1801 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 20164 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 40958 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 50775 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06306931_06307410.mRNA mRNA downstream 54594 6306100 ~ 6307410 (-) True CI01000299_06306931_06307410
CI01000299_06476844_06477950.mRNA mRNA upstream 98748 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06497414_06502931.mRNA mRNA upstream 119921 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 128322 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 139360 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 144733 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
TU468578 other downstream 437871 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 526015 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 905896 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1433186 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1811283 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 154766 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1737045 True 361 lncRNA 0.44 2 NC_048582.1 12960141 ~ 12980331 (+)