RNA id: CI01000299_06430810_06434834.mRNA


Basic Information

Item Value
RNA id CI01000299_06430810_06434834.mRNA
length 4381
RNA type mRNA
GC content 0.39
exon number 7
gene id CI01000299_06430810_06434834
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6428051 ~ 6435178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATATAAAGCCCTCCTCACCAATGAAACCTCAGCAGAACCTCATCCTCTAAACACACTCGCTCTTCAACTTGTCCATCAAACTCAATTCCCAACTGACCACAGCTACAACCCCAAAACTATTATTAAAGAAATTGACAAAAATCTAAAAGATACTCATGATGAATCACTAAAAGCACATTTTTGATCTCCAAAATAAACTCCAATGTTACTCGACCTTTACAGTTTTTTTACAGACGCTAGGACACATTTCTCAATACTTAGGTCACTTTTGCAAAACTCACACAGTGAGCACAACAGAAGTCTATGTGGGCTAAACTGAGGATCAATTATCATTGCTTTGGAACAAAATGCATTCAATGACTACATCTCTCAAATTTCATGAATTCTTTTCTCACTCAGACACAACAACTGCCAAAACTCTTTGTACGTACAGGCCAATTTGCACATGCTTACATACTGTTTTCAAAACTGTTAAACTTAAGTTAAAAACAGTAACATAATACAAAACTGAATAAGACAGAAATTTGCTACATTTCTACAGTAATATAGTTATGAAATATATTCTGAATCTAAAAAATCAAATACTATCAAAACAATTAGATGAAACTGAACACCTACACAAGCATTAGTCTTTCAATTTCATTACCATCAATTCAAAAGGGGAAACTTAGGAATAATTTTGTTCTGTAATGTAAACATGGAGCATGTAACATAAACTGCAGTGAATTATAAGCAGTAGAGAGTGTCATTCTTGTTTTGTAAAGACATTTTAAAAAAGAAAACATTGTATAATGCTAACTGATGTTAGTGTTTTTAGGTCGATGTTTTATGAGTGACAAAGTGTGTTTGCTCAGTGAAAACCTTTGCTAGTGTTCTGGAAGAATGAGTTGATTTGAGACATGAATGAAGTGTTTTGGTAGATTTGGTGCATTTTGAATGTGAAGTTAACCTCTGTGCCAAGATGAAAGTTGGTTAGGAGAACTGTGTGAAGAGTTTTGAAAAAGTGACCTAAGTATTGAGAAATGTGTCCTAGCGATTGTAAAAAACTGTAATAGAACCACTAAATTGGCAAATTATCTATTAATGAAACAATTTAAAGAAAGACAAATCCACTCCAAATACAGATTAAGTGACCATGATCTAGAAACAGAGAGAGGAAGACATAGACAAACATGGACAGAGAGAGAGCGGAGGATCTGTAGACACTGTGATCTACAGCAATATGAGAAACACTTTCTACTCATCTGTCCTAAATATCAGGATGTGAGAGAAACATTTCTCTCCAGATTTGAAACACTGATTCCATCATTCATTGAACTGAGTGATACTGAGAAAATGCCCTTCATACTTGGTGAAGATGAGAGCAGCGCTACACTAGCTGCACAATGTGTTAGCCATTCACAACATCAGAGACGGATAACTCTCTAGAGACCTGCTTCATTTATTCATTTACTCAGATGGATTTATTTACTATGCTACATATGACATGATGTATACATATATGTTTTGTTTGTTTGTTTATTTTATTATTTATATATAATCTGCTAATGCTTTGGCAACATTGTGATTCACAGTCATGCTAATAAAGCTCAACTGAATTTGAATTTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGACAGAGAGTAAGATAGAGAGAGAGTGTGTGTGTGTGGGGGGGTGACAGAGAGTAAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGACAGAGAGTAAGAGAGAGAGAGAGTGTGTGTGTGGGGGGGTGACATAGAGTAAGAGAGAGAGAGAGTGTGTGTATGTATGTGTGGGTGGGTGACAGAGAGTAAGAGAGAGAGAGAGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTTGCCACTCCCTCATCATATTCCTCTTGTCAAACCAGTTTCTCTGGATCTCATGCAGATCAGTGTGTTTTTCAGTCTGATTATTAAATGGTTAGAAATGAGTTTCCAAGAGTTCACAAACAACATCTGACATTGATTCCTCTCAACAAAAGTCTTCGCTTTATTGATTTGTATTAATTTGGACTAGTTTTCTTCCTCATAAGCACATCACACTGTCACAGCACTGTGGTCTGTGTGGCTTTTCTAACATGAAACTGTGAGACATATAAGAGCACCAGGGCAAGATGAGACTCGACGGCTGGGCGGGACTTTACTGTTCGACTTCCTGAACCAGTTTCAGTGTCTTCTACACCTTCAGTTCCTTTCATACCTGTAACACTGACACCAAGAGATGGCAGCAATACTGGGAATATTTGGGATTTGTCTGCTGTTCAGCGGAGTGCAGGTGTCGTCTTCGGCCTTGACTGTAGATATCCCACAGAAAGATTATAAGATTGCCAGGGGTGATGATGCGACGATACCCTGCAAGTTTTTACCCCAAGGTGCGAGTGCACAAGTCCAAGTAACATGGACAGCAGCTCCAGCTGTGCCGGGAGAGCCAACGATGACCATCGTCACTTACTTCGGTCCCACTTCAATTAAAGTGACGACGAAATATAAAGGCAGGGTCAACCTATTACACGATATCCCAAATGGAAAAGCCGACCTGCAGCTCCTGAAAGTCACTAGCAAAGACACACGCAGTTATGAGTGCAAAGTCGAGGTTATGAATAATGAAGAGGACGGTGTGTCTGACACGGCCAATCTCATAGTCTTGGTGGCTCCATCGCCGCCCATCTGCAAGATTGAAGGGGTGTCAGAATACTATCAGAACATCAACCTGACCTGTCGCTCGGAGGAGGGAACGCCCACACCAACCTACAAGTGGCAAAGATACGACACCACGAACATCGCTCGGCCGAACCCGCCCAAGACCACTGACATAAATGGAGTGCTGTCACTCTACAATATTACCGTAGAAACGTCCGGTTTCTTCATCTGCACGTCCACCAATGAGATCAAATCTGCAACGTGTAATCTGACCCTGGCCGTCATGCCACCGTCCATGAGCATGGCCTCCATTGGAGGGATCATTGGGGCCATTGTGGCCGTGGCTCTTATCTTTGGAATCATCATCATCTGCTGCTATTGCTGTCGGAAGAAGGAAAAGGCTGAGGAATACAGGATGGGGACTCCTGAAGGAGGAGAATTCACAGACAAGGATCCTGAAGGGAAAGGGGACGGTCAGGATGAACACGTCAGCTACGAGGAAGAGCGTCGTGTGAAAAGCGCAGACAGACGTGATCCGCAAGACGACCGCAGCGAGAGGAGCTACGATCGGCGCAGCGACTACACCGACAGACGAGACGATCACAGTGACCGCCGGGAGAGGTACGATCGAGATGACCGCTACGATGACCGCCGCGACCGCTACGATGACCGCCACGACCGCTACGATGACCGCAAAGACCGCTACAGTGATCGCAACGACCGCTACGATGACCGCAGAGACCGTTACGATGACCGGAGGGATCGTGACGATGACAGTGACCATTACTCCGAGCGCTACGACAGCCGCGACAGACCTCCCAGCGTTCCGCCCAATAAACCCAAAGACCCGAGACACTGAGTTCAGACACCGATCCGTCCCTCAGCTACGGAAGCCCAATCATCAGAAAAAGAATCATAATCATAATCATATAAAAGGTCAAAAACATTACACACCAAGTCATAATTATGACATAAAAAGTTGAAAATATGACAGTTATATTAATGAGATGAAAAGCTGGAATAGACACAGTTATAATTTTAGATAAAAAGTCAAAATATGACATACTAAGCCATAAATTTGATCTCATAATTATGACTTATTATATCAAAATTTTGACTTTTTATGTCATGATTAAGATTTACCAAAGCATAACAACAACAAAAGTTTTTCATCCTCATTTGCTGAATATGAGATTTGACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467088 lncRNA upstream 35695 6392080 ~ 6392356 (+) False G406494
TU467090 lncRNA upstream 35695 6392148 ~ 6392356 (+) True G406494
TU467074 lncRNA upstream 104428 6323185 ~ 6323623 (+) True G406480
TU466743 lncRNA upstream 116352 6310408 ~ 6311699 (+) True G406172
TU466710 lncRNA upstream 141625 6279419 ~ 6286426 (+) True G406142
TU467131 lncRNA downstream 106084 6546125 ~ 6546203 (+) True G406532
TU467132 lncRNA downstream 106084 6541262 ~ 6541985 (+) False CI01000299_06541306_06541820
TU467133 lncRNA downstream 106084 6546082 ~ 6546203 (+) True G406532
CI01000299_06424909_06425694.mRNA mRNA upstream 2318 6424811 ~ 6425733 (+) True CI01000299_06424909_06425694
CI01000299_06416707_06422267.mRNA mRNA upstream 5403 6416707 ~ 6422648 (+) True CI01000299_06416707_06422267
CI01000299_06396938_06400105.mRNA mRNA upstream 26709 6396938 ~ 6401342 (+) True CI01000299_06396938_06400105
CI01000299_06322253_06326504.mRNA mRNA upstream 101489 6322253 ~ 6326562 (+) True CI01000299_06322253_06326504
CI01000299_06312445_06318421.mRNA mRNA upstream 109630 6312040 ~ 6318421 (+) True CI01000299_06312445_06318421
CI01000299_06439603_06455258.mRNA mRNA downstream 4425 6439603 ~ 6455462 (+) True CI01000299_06439603_06455258
CI01000299_06458969_06464458.mRNA mRNA downstream 22897 6458075 ~ 6464695 (+) True CI01000299_06458969_06464458
CI01000299_06466541_06475063.mRNA mRNA downstream 31363 6466541 ~ 6475639 (+) True CI01000299_06466541_06475063
CI01000299_06532144_06534604.mRNA mRNA downstream 96966 6532144 ~ 6534631 (+) True CI01000299_06532144_06534604
CI01000299_06541306_06541820.mRNA mRNA downstream 106128 6541306 ~ 6541975 (+) False CI01000299_06541306_06541820
TU466732 other upstream 127543 6237838 ~ 6300508 (+) True G406161
TU466818 other upstream 1054472 5371181 ~ 5373579 (+) True G406244
TU466651 other upstream 1500207 4924462 ~ 4927844 (+) True G406096
TU466374 other upstream 1723426 4702382 ~ 4702508 (+) True G405864
TU466383 other upstream 1922134 4505404 ~ 4505917 (+) True G405866

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU617522 True 456 lncRNA 0.39 2 NC_048570.1 74992612 ~ 74993103 (+)