RNA id: CI01000299_06476844_06477950.mRNA


Basic Information

Item Value
RNA id CI01000299_06476844_06477950.mRNA
length 3567
RNA type mRNA
GC content 0.45
exon number 1
gene id CI01000299_06476844_06477950
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6475983 ~ 6479549 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACTGTGTTTTAGACCTTTGACCTTTGGCACAGAATGGCTGTTTTGTGACCTTAGTAACAGAGGTCTGGAACCCATTAACTGAAGAATTACAGTACAGTAGCGGCCAAAAGTGTCCGGCGTATGAAAATTGACACCCTAACCCTTTAACTGTTCATTATGTTTGAATAAAGATTTTGTAGTCATATTGTGTAGTTTTGCTTGGACTTGGTTGTTTGTTTACATAATTTTGATTTTGCCAGGCTGTTGTACAATGAAATTATGAATATGTGCAAGAACAAGAGAGAACCAACAAAATGTTGTTGTAGTCAATGTTTGCTTTTTTCCAGTGTTTAGTATTTTGGTCTTCCCTCAAATTTAAAATATTTACAAAAAATATAAAATATTTTCCTCATATTTTGATGGTCTAAACGAACTAGTAGGGTCATTATTTTCCCCATATTCTTGCAGCTGCTCTCTTCCCAGGCTGTGTTCCACTCCACTTTTAGACAGGCACTCACCAACTTCCCTAAGCACTTCCCCTCGGGGGAATCCCTGCCTCCATTTTGAAGTGTGTTCCACTTCTTGAAGTGGACGAGGGAAGTTTATATGGACAGACCCTCGTACCCAGAGGGAGCGAGTCTACTTCATATATACACTTCAAGCAGCTATATATCCCACAATTCAACTTGATTGTGACATCATAGCAGATCGCATTTAACTGAAGTGTATGATATATTAATTATTTTGAGAATTAATTGCATAATATATATTGTGTTGAGATTTAATCACATAATACTTGTAGCTACCTTATGTTCACAATTAAAGTTTATACTATTCTTTTTTTTTTATACCTATAGGAGTTTATATATTTTCTCCAACAACTTATATGCATATAGAATGGCGCATAAAAAAATTAGTGAAAAAATAAGTGAAAATGGGGTTTAAATAATAAATCAGCTCCATAGTGATCAAGAGCTTAGTGCATTTCATTTAAACCTTATGCACGAGTTCCGCCAGTAGTGGGCACTCATGCAACATAAGCAATGACGCAATGAGGCACTGAGGGTCCATGAGATTGAGAGAAGTACAATTTGGAGTGGAACACAGCCTCTGCCTGCGTCTCAATGTGCATCCTAAATAGTATGTGACATTAGTAATTTTCAATACTATTTAGGGCGGATAGTATGCACATCCAGTCTGTCAGTAACGCTGTTTAGTTCCTGTCTCTATGAAGCCCCTCCTTCTGAAAAGCACAATGTGCTCTGATTGGTCGACTGGAGAAGTGTGTTGTGTTTGGGAAATGTCCCGCCCCTTACCCTAACCGCCAGTTTCAACACACTACTATCTAACTCAACCAGGCCCCGCCCCTTTATTCTGCGTATGAATTATTTAAATGAGGAATATTGTGAAGAAAACTCAAGATGGAGGCGTTTCAGGAGTTCAGAAACACTGATATAGAGAAGAACTCCTGCTGGAGGAGCTTTGGAGAGCTTTTTCATGCTGAAAGAGCAAAACAGGGGAAAACAGCATCATAGGTCCTCTTTAACATCTTGTTTCACTCATTTTTAAGTAGTCTGCTAGAAGTTAAGACGTGTCTGCTTCTATCTCAGGTGTCTTCATGGCGTCCTTGCTTCGCCCCGCTCTGCTCACCCTCCTCCTCTGCGGTGCGGCCGGCTCGTCCCAGCGGCCTCAGTGGCCCGTCCAGCGTGTGCCCGTGGTTTGGCCGCAGCAGACGGAAGATCGGCCGCCGCCTCACTTCCTGCAGCCGGCTCAGCTGGAGGTGACCTCTTCCTGCGGGCCGGACTGCCACAAGCAAGCGCCTGCACCCAGCTACTGGGACCTGCGGCACTTTCTGTCCTACGAAACGCTGCATTCCAGCGGCCAGCTGACCGAGACGGCGGTGGGCATTTACGGATTTGATGCCAACAGTTTCTACAAGACGCCTGCCGTTCGCTCCAGATCCAAACGTCAGATCTTCGGCCACGACAGTCGCTTCAGTATTGTTGGGCAGGACTTCCTGTTGAACTACCCCTTCTCCACAGCCGTCAAGCTGTCGACCGGATGCTCGGGTACGTTAGTGGGCGATCGGCACGTGCTGACGGCGGCGCACTGCGTCCACGACGGCAAGAACTATGTGAAAGGAGCCCAGCGGCTGAGAGTGGGTTTCCTGAAACCACAGCAGAAAGATTCATCAGGCAGAAACGGCACCAGACCAGATAAGATGAAGTTCCAGTGGATCCGAGTGAAGCGCACACACGTGCCGAAGGGCTGGATAAAGGGCACCGCCAACGACATTGGCATGGATTATGACTACGCCCTGCTGGAGCTGAAGAAGGCACACAAACGGAGGCACATGAAGCTGGGCATCAGCCCCGTGGCCACGCAGCTGCCCGGTAAACGGGTGCAGTTCTCCGGGTTCGACAACGACCGGCCGGGTCAGCTGGTTTACCGCTTCTGCGAGGCCGGGGACGAAACCTATGACCTCCTGTACCAGCGCTGCGACGCTCAGCCGGGTGCCAGCGGGTCCGGAGTCTACGCCCGCATGTGGAGCCGCCGACGCCGGCGCTGGGAGCGTAAGGTCATCGGGATCTTCTCCGGACACCAGTGGGTGGATCTCAGCGGGACGCCTCAGGAGTTCAACGTGGCGGTGCGCATCACTCCCCTCAAGTTCGCCCAGATCTGCTACTGGATCAAGGGAAACTATGTGGACTGTAGAGAAGGTTGAGGAGCCGCCGACAGCTTTGCTTTCACTTTATTAGCACATAAGATACTCTTATTTCATGCAGGAGAGTTGCACAGTCCAGCAATACACAAGAACAATCATTAACTAACGAACTCTTTGGCTTAAAACACTTTAAGACACTTGTTTAGCCAAACAATACATATTGTACAAAAGTAAGGAAGGTTGTGCCAAAAAAATCTTTCTTCATTGATGCCCATTTAAACATAGCAAAGTAATGTTTTATGAGTGCCTGATTTTTATCTGAAGGCTCTTAAAGACAAAAGGGACCAACTTTATATCAAGTGTCTTTAACTACTATGTACATGCACTAATCATTTGATACAATTATTGTGTATGTTTTACATTGTACTTCTGCATATTCATTTATCCCACCCTTAAACCTTCCCATACCACCAAACCTGTCCTAACCTCACCCGTATCCCACCTTGATAGCAGCACAAGTGTTTGCAATACAACATCAACACAGTAAGCACATTGAACCTAACAATTATCTTTTATGAAAGTACAGTTAAAGACAGCTGATATATAGTGTGACCATTACAGGAATTATCAGAGCTCAGGAGACTGAAGGACTGAAGCAGCTGCCACAGATTCTGTCGACTCTTCTCGTTTTCTCTAATGTACTGAAGTCTGAATGTCATGCATACCTAATGTCTGAGAACTACTGTATGAGACACTGCTTTACAACCGTTTGTTTCCCTCTAGTGGTGAGAGACAGAACTGCAGATATCCACACTCACTGTAAATCAGTGGATATCAGCTCCTGATCGGCACTTTGACATTTATTCATTCTATGGCACTAATCATTGAGATTTTAAATGCCCTCTGTTACAAAACATTAAA

Function

GO: NA

KEGG:

id description
K09627 PRSS23; serine protease 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468719 lncRNA downstream 10798 6462457 ~ 6465185 (-) True G407924
TU468732 lncRNA downstream 16863 6458779 ~ 6459120 (-) True G407937
TU468717 lncRNA downstream 18754 6454093 ~ 6457229 (-) True G407922
TU468741 lncRNA downstream 22323 6452795 ~ 6453660 (-) True G407946
TU468743 lncRNA downstream 24605 6450662 ~ 6451378 (-) True G407948
TU468820 lncRNA upstream 9888 6489437 ~ 6489704 (-) True G408021
TU468821 lncRNA upstream 11638 6491187 ~ 6491512 (-) True G408022
TU468822 lncRNA upstream 12208 6491757 ~ 6492018 (-) True G408023
TU468829 lncRNA upstream 61736 6541285 ~ 6546201 (-) True G408028
CI01000299_06362136_06376918.mRNA mRNA downstream 98748 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 115780 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 134143 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 154937 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 164754 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06497414_06502931.mRNA mRNA upstream 17607 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 26008 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 37046 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 42419 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
CI01000299_06526127_06532048.mRNA mRNA upstream 46578 6526127 ~ 6532048 (-) False CI01000299_06526127_06532048
TU468578 other downstream 551850 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 639994 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 1019875 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1547165 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1925262 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 52452 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014420 True 1122 mRNA 0.54 1 CM030128.1 13450098 ~ 13451219 (+)