RNA id: TU463914


Basic Information

Item Value
RNA id TU463914
length 281
lncRNA type read_through
GC content 0.47
exon number 2
gene id G403595
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 60419 ~ 162795 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGATTGGCCAGCAAACTCACCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGAGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCCCCAACTAAGTATTGAGTGCTGTACATGCTCATACTTTTCATGTTCATACTTTTCGGTTGGCCAAGATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464350 lncRNA downstream 387706 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 419961 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 440037 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 486620 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 907813 1070608 ~ 1075893 (+) False G404137
CI01000299_00042567_00045857.mRNA mRNA upstream 14228 42454 ~ 46191 (+) False CI01000299_00042567_00045857
CI01000299_00013442_00032151.mRNA mRNA upstream 27345 12783 ~ 33074 (+) True CI01000299_00013442_00032151
CI01000299_00005753_00010092.mRNA mRNA upstream 50194 5635 ~ 10225 (+) True CI01000299_00005753_00010092
CI01000299_00255175_00294177.mRNA mRNA downstream 92380 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00315123_00328550.mRNA mRNA downstream 152328 315123 ~ 330163 (+) True CI01000299_00315123_00328550
CI01000299_00345042_00361660.mRNA mRNA downstream 182247 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_00419297_00444862.mRNA mRNA downstream 256502 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_00689032_00727635.mRNA mRNA downstream 526111 688906 ~ 727836 (+) True CI01000299_00689032_00727635
TU463930 other downstream 201344 364139 ~ 410788 (+) True G403609
TU464370 other downstream 442075 604870 ~ 606350 (+) True G403972
TU466101 other downstream 2991802 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3968463 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 4132738 4295533 ~ 4320141 (+) True G405842

Expression Profile