RNA id: TU464099


Basic Information

Item Value
RNA id TU464099
length 249
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G403738
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 240213 ~ 240461 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATAACGAAGCCTCCTTTCTCTTCACGTCGCACTCTCGCTCCCGCTCAGTTTATGTGCACCTGGTGCGGCAATCAGACTCCTTCACTTCACGCTCTCCCGGTATATAACGACCATGTAAACCGTTGTCATTCCCTATGCGAAGCTGTGAGCTGGCGGCCCATGCCGAGACGGGGATTTTCTCTCAGCAACAGCGCAGAAAGGACCAGCGCGTCTGCTTGCTGCTCAACTATCTGGCTGAAACATTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464136 lncRNA downstream 458 239537 ~ 239755 (-) True G403772
TU464098 lncRNA downstream 5951 234040 ~ 234262 (-) True G403737
TU464075 lncRNA downstream 103280 132613 ~ 136933 (-) True G403725
TU464055 lncRNA downstream 124114 104170 ~ 116099 (-) True G403714
TU464061 lncRNA downstream 135727 100151 ~ 104486 (-) False G403714
TU464137 lncRNA upstream 689 241150 ~ 242770 (-) True G403773
TU464138 lncRNA upstream 2365 242826 ~ 243621 (-) True G403774
TU464139 lncRNA upstream 3251 243712 ~ 244005 (-) True G403775
TU464140 lncRNA upstream 4129 244590 ~ 245004 (-) True G403776
TU464141 lncRNA upstream 5036 245497 ~ 245771 (-) True G403777
CI01000299_00185106_00209299.mRNA mRNA downstream 30914 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 69227 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 208402 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 210880 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 430219 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 762858 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 817359 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 430373 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 830146 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1419194 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1615178 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1777226 2017687 ~ 2018050 (-) True G405053

Expression Profile