RNA id: TU464137


Basic Information

Item Value
RNA id TU464137
length 1621
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G403773
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 241150 ~ 242770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATTAGCCTCCTGTTGACCAACACATTATGCATAAAGACATGTGGTTTAGAGGTGGTTTTAACACATGTGATTTTTAACTGAACCAATTCTAAAGATTCAACTGGTCAACCCTGAAAGAAATACTAAACCTTAACCCTAACCTCGTACAGCATTGGTAGCACATCCTGGTAAATACTATTTGTCGCAATCAGATCCATCCATGATTCTTCTGAACTCTAAACTGAATCAATGATGTCTGGGGACACGCTTTTTTTTTTATTGCTGATGTTTTTTTACAATGACATGATCATATCATAGAGCAGGCTAAAGACAAAGTCAAGGCGATAGCTGTTTTGGAAGTAACCAATCATTCAGTGTAATTTGAGAACAAAACTAGGCCACGTATTCTACAGCTGGTAGAATTTTAGATAACTAAAACCACGATTTTTAATTGTGCAACTTTAAAGAGCTTAATGTCTTCATAGTTAAGAGTTGAATGACTAAACATTCATTAATGTCATATGTTTTAGTAATTAGATCATGCGCTGGCATCATTCTGTACAGCTGAATGAATATAAAGCATTTATGGAAGAGTCTTCTGATAAACAATCACAAAATGATGTAATTAGCAAATGATCATATTTAAAACAATCCACAACTCTGCAAGGCTTGCAATATGATTGATAAGGGATCAAAAACAAGGGATACAGATGGTAGTACCACTGCAGCCCTGATTCAATGTGGTCAGCAAAAACGGGTGTGTGATATGATAATAGCCTTAATGTAAAACTGAATCTCGGTGACCCAAGTTATTATCTTCATAACACCAAGGCTGCTTTTATCCCCCAGATCATCGTCTCTAGTTATTTATAGCGTCGTGGACGGCAGCCATGCCTGGCTGGTACCGCGCTCATATCCTCGGGCTGTTTGAAACTGATGTGCAATTTAATTAAGAAGATCATTTAGGCACAGATATGATCTACTTAGCGACTGACAGAAATTTGCACTGTGTTTTCAGAAACTAAAATTATGAAAGGCAAATTATGACACACTGACTTACCTTTAAAGGCTAGTAAATGATCCAGATTCTTGCCCTAGTTATGAAAACACAACATTAACTTGAATTTAAAAATACTCCCTCCCTTCAACAACAAAGTTTTGCCTTGACAGGAAGATGTTGGCCCAAAGTCTCGGTTCTCTTTACAAGTGCGCAATACGGCAACCCCACTAAAATAGTCTCATATTAAAGGGTAATTTGTTCATGAAACACGCCTGGCAGTTGTAAAGTGTTAAAAGGTGCAAGCTAATTACCTTTCCAAGTCTGTCTAAACGTGTTTCTGATCGATTCAGAAGAGTGCTGTTGCTCTCACGGCTTTGGCTAATAAAGAGTCAGTGCCTGTCTGGACTGTTTTCATGGTTTTTTTAACGGGAAGGGCAGAGTCAGTCTCCCTCTTTAAAAAAAAACATGCTCTTCCTCCCAACACGTTTGCCAAATGTTCGAAACAAATGCGGCCTTTTCCTGCCACGCCGCAGGTTTTGCTCTTTTAAAGTCTGGACTGTACATCTAGTAAGACCGGAGGTTTGATCGGGCCAACATTAAAGATGCTGGCGTTCCTTAAATTTGCATAAAGCCCTTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464099 lncRNA downstream 689 240213 ~ 240461 (-) True G403738
TU464136 lncRNA downstream 1395 239537 ~ 239755 (-) True G403772
TU464098 lncRNA downstream 6888 234040 ~ 234262 (-) True G403737
TU464075 lncRNA downstream 104217 132613 ~ 136933 (-) True G403725
TU464055 lncRNA downstream 125051 104170 ~ 116099 (-) True G403714
TU464138 lncRNA upstream 56 242826 ~ 243621 (-) True G403774
TU464139 lncRNA upstream 942 243712 ~ 244005 (-) True G403775
TU464140 lncRNA upstream 1820 244590 ~ 245004 (-) True G403776
TU464141 lncRNA upstream 2727 245497 ~ 245771 (-) True G403777
TU464142 lncRNA upstream 3188 245958 ~ 246247 (-) True G403778
CI01000299_00185106_00209299.mRNA mRNA downstream 31851 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 70164 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 206093 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 208571 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 427910 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 760549 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 815050 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 428064 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 827837 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1416885 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1612869 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1774917 2017687 ~ 2018050 (-) True G405053

Expression Profile