RNA id: TU464248


Basic Information

Item Value
RNA id TU464248
length 283
lncRNA type intronic
GC content 0.48
exon number 1
gene id G403856
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 426870 ~ 427152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCCAACACCGAGACCAAAACAGCACTGTGTACTGGAACACCCTAGTTGTGCAGCACACCTCAATGGCAGTACAGACAGTAGTGTCGAGATCTAGAGGTGTTTAAACCGTTGAACAGAAGCAGCTGTAATAACGCGAGCAGGCGGATGGGTGGCTGTGGAAGACTGGGATCCAAACAGCAGCCTCAGATCCAAAAGCCAAAAGGAAATATTTATGAGATGTGTAAACGTGTCGCCCTGCTGCTTCTTTCCGCTACCTTGTAAGACATCAAAGAGACTCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464247 lncRNA downstream 1267 425311 ~ 425603 (-) True G403855
TU464246 lncRNA downstream 1717 424899 ~ 425153 (-) True G403854
TU464245 lncRNA downstream 2536 424126 ~ 424334 (-) True G403853
TU464211 lncRNA downstream 50399 364147 ~ 376471 (-) True G403822
TU464209 lncRNA downstream 63552 362893 ~ 363318 (-) True G403821
TU464249 lncRNA upstream 1281 428433 ~ 429429 (-) True G403857
TU464250 lncRNA upstream 2483 429635 ~ 429965 (-) True G403858
TU464232 lncRNA upstream 6207 433359 ~ 433589 (-) True G403840
TU464233 lncRNA upstream 11157 438309 ~ 438786 (-) True G403841
TU464230 lncRNA upstream 17637 444789 ~ 446479 (-) True G403838
CI01000299_00185106_00209299.mRNA mRNA downstream 217571 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 255884 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 21711 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 24189 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 243528 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 576167 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 630668 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 243682 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 643455 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1232503 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1428487 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1590535 2017687 ~ 2018050 (-) True G405053

Expression Profile