RNA id: TU464250


Basic Information

Item Value
RNA id TU464250
length 331
lncRNA type intronic
GC content 0.35
exon number 1
gene id G403858
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 429635 ~ 429965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTGACAGTCACTTGTCGCCACCTAGTGGCATAACGATGTAATCGATACACTCGTTATTTGAAGCATCAAGTTACTTTCAAAAGGTGATTTACTCTGTTGTGATCGCTTCCGTAGTCATCAGTGTTTATATCTGAACTATAAACTTTTATCCCAGTTCTTCTGTGATAATATGAAAATTTTAACAGAAATAATGATACTGTGAAAAGACTGTTTGTAAAACTGTTTCATACTTATACTATACATGAGAACTACACTCTCTGGCTCAACAGCAGCACCAACGCAGATCTGAAAGTTGATGTGTGATTTTGTAAAGTTTAATAGACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464249 lncRNA downstream 206 428433 ~ 429429 (-) True G403857
TU464248 lncRNA downstream 2483 426870 ~ 427152 (-) True G403856
TU464247 lncRNA downstream 4032 425311 ~ 425603 (-) True G403855
TU464246 lncRNA downstream 4482 424899 ~ 425153 (-) True G403854
TU464245 lncRNA downstream 5301 424126 ~ 424334 (-) True G403853
TU464232 lncRNA upstream 3394 433359 ~ 433589 (-) True G403840
TU464233 lncRNA upstream 8344 438309 ~ 438786 (-) True G403841
TU464230 lncRNA upstream 14824 444789 ~ 446479 (-) True G403838
TU464258 lncRNA upstream 36709 466674 ~ 466935 (-) True G403866
TU464259 lncRNA upstream 37185 467150 ~ 467350 (-) True G403867
CI01000299_00185106_00209299.mRNA mRNA downstream 220336 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 258649 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 18898 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 21376 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 240715 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 573354 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 627855 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 240869 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 640642 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1229690 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1425674 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1587722 2017687 ~ 2018050 (-) True G405053

Expression Profile