RNA id: TU464230


Basic Information

Item Value
RNA id TU464230
length 1691
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G403838
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 444789 ~ 446479 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACATATTCACGCACTGTCAAACATACATTTCTGCCAACATATAATCCATATTGTTTTTTTTGTTTTTTTAATATATATATATATAATATGCATTAAGAAAGAATTAAAATGTTTAAAAAAAGATTAAAAGAATTTTGGCACTCAAGCATTTAGACAAAAGGCAGCTGCTTCCTTCAGAGAAAGACTTTTTTTTCTTGCACCATGACAGAGTAATCACTAACTATGAGGGATTGTGTGGCGTTCCCTCACCGGACACAAAACTAGTGTGGAGTGGTTCACAGTTAGTATCAAAACTTGTATAAAAACATCTACAAAAGAAAGGTTGGAGTGCGGTACAAACGCTTGGAAGGCAGCATGTGCCGTAGAGTCTCAGGCCAGCAGAGATGATGCATCTAAAACATTACAAATCCAACTTGTGCATCGACGGCGGTCTACAGGTGTGAGCCGGGACGTCCGGGTCACTTCACCCAAAAATTAAAAAGTACCATTTTATTTTGCATCAAAACAAATGTATTTTTAGAAGCAATAACATTTTTCATGACATGTTTTTCCTAAATTTCTACTGTAATTCAGCAATGAAAAAGTTTTATTTGAATTAAAATCAGTATAAATCCATCAAATAATACCATTATGTAATCTAACTATTGTACTATATGTGTGTGTGTGTGTGTGTATATATATATAAATAATAATGCAAATTTCAGGGCAAATTGTCATGAAAAATGCAATAAAAAAAATACAAAATAAAATGGTCCTAAAATAGGCTTTATTTTCTTCATGCAAACAAAAAACTTAATTTTTTCCCTTTCGATTTTGGGGTGAAATATGACCTGAACATCTTTCACCAGTTTTTTTAGACAGAAGGTGACAATTCTTCATAAACATCAGTAATTAAAGCTGTGGTGTTACTACAGTTAAAAACTGTCCCGAGATTGAATTTCTCGTCTTACTTTTACAGGCATTTAGTTCATTAAACACAAGCAGAACAATTTCATGTGTAAACTGTTCGTAAATAGTTTGCATTCAACTCAATGACACCGGTTTCACTTACACAATAGCACCCAATAAACCATTTATAAAAGCTCTCGCACATAAACAGTCACGTACAAATCAATAAAACATTCGCAAAAACATTCTTAAGAATAAATCATCGCATATAACCATTCAATAAAACCATTCCTGAAAGCATTCTTGCCAATTTTACGGACAATTTACACAAATGAGTTGCATTTCATGAACATGGACTGTTGTTTACTTACTATGATATCGTGTCTTACTGCACATTTAAAACAAACAGCAAAACTGGAAGTGTTTGACTGTTACCTGCTGATCTATCCATCGTGCGATGTTGTGATGATACTGTAGTAGTTCTTTGGACTCTGACCTTGATATTCTCAAAAAACTTCACATGTGAACCCATTCAAAATCTGATTGTTTTCTATAAAGTAAAATGACGATATAGCACATGAAACAATTCCTGCTCAAACCCGCTGCCGTAAGAAATATGTTAAAGTGTGTTAGGAGAACCTGATTGAGAACCTGACGTAAACGGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGTTTCGGCAGGCGGTCCGAAGGTCTCTTTGGTCAGTAGGCGTGCGGCTCTTTGCGGCTCAAGGAGCGGATGTGACTGGAAGAGCAAGTGGCACTGCGGATCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464233 lncRNA downstream 6003 438309 ~ 438786 (-) True G403841
TU464232 lncRNA downstream 11200 433359 ~ 433589 (-) True G403840
TU464250 lncRNA downstream 14824 429635 ~ 429965 (-) True G403858
TU464249 lncRNA downstream 15360 428433 ~ 429429 (-) True G403857
TU464248 lncRNA downstream 17637 426870 ~ 427152 (-) True G403856
TU464258 lncRNA upstream 20195 466674 ~ 466935 (-) True G403866
TU464259 lncRNA upstream 20671 467150 ~ 467350 (-) True G403867
TU464267 lncRNA upstream 31491 477970 ~ 478252 (-) True G403874
TU464268 lncRNA upstream 32065 478544 ~ 479150 (-) True G403875
TU464307 lncRNA upstream 79042 525521 ~ 525854 (-) True G403913
CI01000299_00185106_00209299.mRNA mRNA downstream 235490 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 273803 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 2384 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 4862 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 224201 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 556840 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 611341 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 224355 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 624128 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1213176 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1409160 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1571208 2017687 ~ 2018050 (-) True G405053

Expression Profile