RNA id: TU464258


Basic Information

Item Value
RNA id TU464258
length 262
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G403866
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 466674 ~ 466935 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACATAATTAAGTGTAATTTAAGTGTTTGTATAAATAAGTTAATTTTAACCTTCATTAATATAGTAAAGTAGTACCAACTGCCTCCCATGTGTAGTTTACAGCATTAGTTGAGAGATTTTTTTTCCTCTAGAAAATTTGCCATGTACTGTAACTGATAAACTACATCCAAAATAATCGATATCAAATCGAATCGAAATCGAATCGAATCGTGAAAATTGTGTCAATACCCAGCCCTATTACTCATACATAGTTATATACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464230 lncRNA downstream 20195 444789 ~ 446479 (-) True G403838
TU464233 lncRNA downstream 27888 438309 ~ 438786 (-) True G403841
TU464232 lncRNA downstream 33085 433359 ~ 433589 (-) True G403840
TU464250 lncRNA downstream 36709 429635 ~ 429965 (-) True G403858
TU464249 lncRNA downstream 37245 428433 ~ 429429 (-) True G403857
TU464259 lncRNA upstream 215 467150 ~ 467350 (-) True G403867
TU464267 lncRNA upstream 11035 477970 ~ 478252 (-) True G403874
TU464268 lncRNA upstream 11609 478544 ~ 479150 (-) True G403875
TU464307 lncRNA upstream 58586 525521 ~ 525854 (-) True G403913
TU464571 lncRNA upstream 88509 555444 ~ 555651 (-) True G404161
CI01000299_00452374_00452868.mRNA mRNA downstream 13806 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00448948_00449565.mRNA mRNA downstream 16917 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00185106_00209299.mRNA mRNA downstream 257375 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 295688 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00670925_00672195.mRNA mRNA upstream 203745 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 536384 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 590885 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01114487_01122666.mRNA mRNA upstream 646815 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 755924 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
TU464604 other upstream 203899 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 603672 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1192720 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1388704 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1550752 2017687 ~ 2018050 (-) True G405053

Expression Profile